genoPlotR: comparative gene and genome visualization in R

Summary: The amount of gene and genome data obtained by next-generation sequencing technologies generates a need for comparative visualization tools. Complementing existing software for comparison and exploration of genomics data, genoPlotR automatically creates publication-grade linear maps of gene...

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Detalles Bibliográficos
Autores principales: Guy, Lionel, Roat Kultima, Jens, Andersson, Siv G. E.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935412/
https://www.ncbi.nlm.nih.gov/pubmed/20624783
http://dx.doi.org/10.1093/bioinformatics/btq413
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author Guy, Lionel
Roat Kultima, Jens
Andersson, Siv G. E.
author_facet Guy, Lionel
Roat Kultima, Jens
Andersson, Siv G. E.
author_sort Guy, Lionel
collection PubMed
description Summary: The amount of gene and genome data obtained by next-generation sequencing technologies generates a need for comparative visualization tools. Complementing existing software for comparison and exploration of genomics data, genoPlotR automatically creates publication-grade linear maps of gene and genomes, in a highly automatic, flexible and reproducible way. Availability: genoPlotR is a platform-independent R package, available with full source code under a GPL2 license at R-Forge: http://genoplotr.r-forge.r-project.org/ Contact: lionel.guy@ebc.uu.se
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spelling pubmed-29354122010-09-08 genoPlotR: comparative gene and genome visualization in R Guy, Lionel Roat Kultima, Jens Andersson, Siv G. E. Bioinformatics Applications Note Summary: The amount of gene and genome data obtained by next-generation sequencing technologies generates a need for comparative visualization tools. Complementing existing software for comparison and exploration of genomics data, genoPlotR automatically creates publication-grade linear maps of gene and genomes, in a highly automatic, flexible and reproducible way. Availability: genoPlotR is a platform-independent R package, available with full source code under a GPL2 license at R-Forge: http://genoplotr.r-forge.r-project.org/ Contact: lionel.guy@ebc.uu.se Oxford University Press 2010-09-15 2010-07-11 /pmc/articles/PMC2935412/ /pubmed/20624783 http://dx.doi.org/10.1093/bioinformatics/btq413 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Guy, Lionel
Roat Kultima, Jens
Andersson, Siv G. E.
genoPlotR: comparative gene and genome visualization in R
title genoPlotR: comparative gene and genome visualization in R
title_full genoPlotR: comparative gene and genome visualization in R
title_fullStr genoPlotR: comparative gene and genome visualization in R
title_full_unstemmed genoPlotR: comparative gene and genome visualization in R
title_short genoPlotR: comparative gene and genome visualization in R
title_sort genoplotr: comparative gene and genome visualization in r
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935412/
https://www.ncbi.nlm.nih.gov/pubmed/20624783
http://dx.doi.org/10.1093/bioinformatics/btq413
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