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A fast algorithm for exact sequence search in biological sequences using polyphase decomposition
Motivation: Exact sequence search allows a user to search for a specific DNA subsequence in a larger DNA sequence or database. It serves as a vital block in many areas such as Pharmacogenetics, Phylogenetics and Personal Genomics. As sequencing of genomic data becomes increasingly affordable, the am...
Autores principales: | Srikantha, Abhilash, Bopardikar, Ajit S., Kaipa, Kalyan Kumar, Venkataraman, Parthasarathy, Lee, Kyusang, Ahn, TaeJin, Narayanan, Rangavittal |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935425/ https://www.ncbi.nlm.nih.gov/pubmed/20823301 http://dx.doi.org/10.1093/bioinformatics/btq364 |
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