Cargando…

EasyModeller: A graphical interface to MODELLER

BACKGROUND: MODELLER is a program for automated protein Homology Modeling. It is one of the most widely used tool for homology or comparative modeling of protein three-dimensional structures, but most users find it a bit difficult to start with MODELLER as it is command line based and requires knowl...

Descripción completa

Detalles Bibliográficos
Autores principales: Kuntal, Bhusan K, Aparoy, Polamarasetty, Reddanna, Pallu
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2936912/
https://www.ncbi.nlm.nih.gov/pubmed/20712861
http://dx.doi.org/10.1186/1756-0500-3-226
_version_ 1782186532809998336
author Kuntal, Bhusan K
Aparoy, Polamarasetty
Reddanna, Pallu
author_facet Kuntal, Bhusan K
Aparoy, Polamarasetty
Reddanna, Pallu
author_sort Kuntal, Bhusan K
collection PubMed
description BACKGROUND: MODELLER is a program for automated protein Homology Modeling. It is one of the most widely used tool for homology or comparative modeling of protein three-dimensional structures, but most users find it a bit difficult to start with MODELLER as it is command line based and requires knowledge of basic Python scripting to use it efficiently. FINDINGS: The study was designed with an aim to develop of "EasyModeller" tool as a frontend graphical interface to MODELLER using Perl/Tk, which can be used as a standalone tool in windows platform with MODELLER and Python preinstalled. It helps inexperienced users to perform modeling, assessment, visualization, and optimization of protein models in a simple and straightforward way. CONCLUSION: EasyModeller provides a graphical straight forward interface and functions as a stand-alone tool which can be used in a standard personal computer with Microsoft Windows as the operating system.
format Text
id pubmed-2936912
institution National Center for Biotechnology Information
language English
publishDate 2010
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-29369122010-09-11 EasyModeller: A graphical interface to MODELLER Kuntal, Bhusan K Aparoy, Polamarasetty Reddanna, Pallu BMC Res Notes Technical Note BACKGROUND: MODELLER is a program for automated protein Homology Modeling. It is one of the most widely used tool for homology or comparative modeling of protein three-dimensional structures, but most users find it a bit difficult to start with MODELLER as it is command line based and requires knowledge of basic Python scripting to use it efficiently. FINDINGS: The study was designed with an aim to develop of "EasyModeller" tool as a frontend graphical interface to MODELLER using Perl/Tk, which can be used as a standalone tool in windows platform with MODELLER and Python preinstalled. It helps inexperienced users to perform modeling, assessment, visualization, and optimization of protein models in a simple and straightforward way. CONCLUSION: EasyModeller provides a graphical straight forward interface and functions as a stand-alone tool which can be used in a standard personal computer with Microsoft Windows as the operating system. BioMed Central 2010-08-16 /pmc/articles/PMC2936912/ /pubmed/20712861 http://dx.doi.org/10.1186/1756-0500-3-226 Text en Copyright ©2010 Reddanna et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Technical Note
Kuntal, Bhusan K
Aparoy, Polamarasetty
Reddanna, Pallu
EasyModeller: A graphical interface to MODELLER
title EasyModeller: A graphical interface to MODELLER
title_full EasyModeller: A graphical interface to MODELLER
title_fullStr EasyModeller: A graphical interface to MODELLER
title_full_unstemmed EasyModeller: A graphical interface to MODELLER
title_short EasyModeller: A graphical interface to MODELLER
title_sort easymodeller: a graphical interface to modeller
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2936912/
https://www.ncbi.nlm.nih.gov/pubmed/20712861
http://dx.doi.org/10.1186/1756-0500-3-226
work_keys_str_mv AT kuntalbhusank easymodelleragraphicalinterfacetomodeller
AT aparoypolamarasetty easymodelleragraphicalinterfacetomodeller
AT reddannapallu easymodelleragraphicalinterfacetomodeller