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EasyModeller: A graphical interface to MODELLER
BACKGROUND: MODELLER is a program for automated protein Homology Modeling. It is one of the most widely used tool for homology or comparative modeling of protein three-dimensional structures, but most users find it a bit difficult to start with MODELLER as it is command line based and requires knowl...
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Formato: | Texto |
Lenguaje: | English |
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BioMed Central
2010
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2936912/ https://www.ncbi.nlm.nih.gov/pubmed/20712861 http://dx.doi.org/10.1186/1756-0500-3-226 |
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author | Kuntal, Bhusan K Aparoy, Polamarasetty Reddanna, Pallu |
author_facet | Kuntal, Bhusan K Aparoy, Polamarasetty Reddanna, Pallu |
author_sort | Kuntal, Bhusan K |
collection | PubMed |
description | BACKGROUND: MODELLER is a program for automated protein Homology Modeling. It is one of the most widely used tool for homology or comparative modeling of protein three-dimensional structures, but most users find it a bit difficult to start with MODELLER as it is command line based and requires knowledge of basic Python scripting to use it efficiently. FINDINGS: The study was designed with an aim to develop of "EasyModeller" tool as a frontend graphical interface to MODELLER using Perl/Tk, which can be used as a standalone tool in windows platform with MODELLER and Python preinstalled. It helps inexperienced users to perform modeling, assessment, visualization, and optimization of protein models in a simple and straightforward way. CONCLUSION: EasyModeller provides a graphical straight forward interface and functions as a stand-alone tool which can be used in a standard personal computer with Microsoft Windows as the operating system. |
format | Text |
id | pubmed-2936912 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-29369122010-09-11 EasyModeller: A graphical interface to MODELLER Kuntal, Bhusan K Aparoy, Polamarasetty Reddanna, Pallu BMC Res Notes Technical Note BACKGROUND: MODELLER is a program for automated protein Homology Modeling. It is one of the most widely used tool for homology or comparative modeling of protein three-dimensional structures, but most users find it a bit difficult to start with MODELLER as it is command line based and requires knowledge of basic Python scripting to use it efficiently. FINDINGS: The study was designed with an aim to develop of "EasyModeller" tool as a frontend graphical interface to MODELLER using Perl/Tk, which can be used as a standalone tool in windows platform with MODELLER and Python preinstalled. It helps inexperienced users to perform modeling, assessment, visualization, and optimization of protein models in a simple and straightforward way. CONCLUSION: EasyModeller provides a graphical straight forward interface and functions as a stand-alone tool which can be used in a standard personal computer with Microsoft Windows as the operating system. BioMed Central 2010-08-16 /pmc/articles/PMC2936912/ /pubmed/20712861 http://dx.doi.org/10.1186/1756-0500-3-226 Text en Copyright ©2010 Reddanna et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Technical Note Kuntal, Bhusan K Aparoy, Polamarasetty Reddanna, Pallu EasyModeller: A graphical interface to MODELLER |
title | EasyModeller: A graphical interface to MODELLER |
title_full | EasyModeller: A graphical interface to MODELLER |
title_fullStr | EasyModeller: A graphical interface to MODELLER |
title_full_unstemmed | EasyModeller: A graphical interface to MODELLER |
title_short | EasyModeller: A graphical interface to MODELLER |
title_sort | easymodeller: a graphical interface to modeller |
topic | Technical Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2936912/ https://www.ncbi.nlm.nih.gov/pubmed/20712861 http://dx.doi.org/10.1186/1756-0500-3-226 |
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