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CuBIC: cumulant based inference of higher-order correlations in massively parallel spike trains
Recent developments in electrophysiological and optical recording techniques enable the simultaneous observation of large numbers of neurons. A meaningful interpretation of the resulting multivariate data, however, presents a serious challenge. In particular, the estimation of higher-order correlati...
Autores principales: | , , |
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Formato: | Texto |
Lenguaje: | English |
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Springer US
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940040/ https://www.ncbi.nlm.nih.gov/pubmed/19862611 http://dx.doi.org/10.1007/s10827-009-0195-x |
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author | Staude, Benjamin Rotter, Stefan Grün, Sonja |
author_facet | Staude, Benjamin Rotter, Stefan Grün, Sonja |
author_sort | Staude, Benjamin |
collection | PubMed |
description | Recent developments in electrophysiological and optical recording techniques enable the simultaneous observation of large numbers of neurons. A meaningful interpretation of the resulting multivariate data, however, presents a serious challenge. In particular, the estimation of higher-order correlations that characterize the cooperative dynamics of groups of neurons is impeded by the combinatorial explosion of the parameter space. The resulting requirements with respect to sample size and recording time has rendered the detection of coordinated neuronal groups exceedingly difficult. Here we describe a novel approach to infer higher-order correlations in massively parallel spike trains that is less susceptible to these problems. Based on the superimposed activity of all recorded neurons, the cumulant-based inference of higher-order correlations (CuBIC) presented here exploits the fact that the absence of higher-order correlations imposes also strong constraints on correlations of lower order. Thus, estimates of only few lower-order cumulants suffice to infer higher-order correlations in the population. As a consequence, CuBIC is much better compatible with the constraints of in vivo recordings than previous approaches, which is shown by a systematic analysis of its parameter dependence. |
format | Text |
id | pubmed-2940040 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-29400402010-10-05 CuBIC: cumulant based inference of higher-order correlations in massively parallel spike trains Staude, Benjamin Rotter, Stefan Grün, Sonja J Comput Neurosci Article Recent developments in electrophysiological and optical recording techniques enable the simultaneous observation of large numbers of neurons. A meaningful interpretation of the resulting multivariate data, however, presents a serious challenge. In particular, the estimation of higher-order correlations that characterize the cooperative dynamics of groups of neurons is impeded by the combinatorial explosion of the parameter space. The resulting requirements with respect to sample size and recording time has rendered the detection of coordinated neuronal groups exceedingly difficult. Here we describe a novel approach to infer higher-order correlations in massively parallel spike trains that is less susceptible to these problems. Based on the superimposed activity of all recorded neurons, the cumulant-based inference of higher-order correlations (CuBIC) presented here exploits the fact that the absence of higher-order correlations imposes also strong constraints on correlations of lower order. Thus, estimates of only few lower-order cumulants suffice to infer higher-order correlations in the population. As a consequence, CuBIC is much better compatible with the constraints of in vivo recordings than previous approaches, which is shown by a systematic analysis of its parameter dependence. Springer US 2009-10-28 2010 /pmc/articles/PMC2940040/ /pubmed/19862611 http://dx.doi.org/10.1007/s10827-009-0195-x Text en © The Author(s) 2009 https://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited. |
spellingShingle | Article Staude, Benjamin Rotter, Stefan Grün, Sonja CuBIC: cumulant based inference of higher-order correlations in massively parallel spike trains |
title | CuBIC: cumulant based inference of higher-order correlations in massively parallel spike trains |
title_full | CuBIC: cumulant based inference of higher-order correlations in massively parallel spike trains |
title_fullStr | CuBIC: cumulant based inference of higher-order correlations in massively parallel spike trains |
title_full_unstemmed | CuBIC: cumulant based inference of higher-order correlations in massively parallel spike trains |
title_short | CuBIC: cumulant based inference of higher-order correlations in massively parallel spike trains |
title_sort | cubic: cumulant based inference of higher-order correlations in massively parallel spike trains |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940040/ https://www.ncbi.nlm.nih.gov/pubmed/19862611 http://dx.doi.org/10.1007/s10827-009-0195-x |
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