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Validation of experimental molecular crystal structures with dispersion-corrected density functional theory calculations
This paper describes the validation of a dispersion-corrected density functional theory (d-DFT) method for the purpose of assessing the correctness of experimental organic crystal structures and enhancing the information content of purely experimental data. 241 experimental organic crystal structure...
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Formato: | Texto |
Lenguaje: | English |
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International Union of Crystallography
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940256/ https://www.ncbi.nlm.nih.gov/pubmed/20841921 http://dx.doi.org/10.1107/S0108768110031873 |
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author | van de Streek, Jacco Neumann, Marcus A. |
author_facet | van de Streek, Jacco Neumann, Marcus A. |
author_sort | van de Streek, Jacco |
collection | PubMed |
description | This paper describes the validation of a dispersion-corrected density functional theory (d-DFT) method for the purpose of assessing the correctness of experimental organic crystal structures and enhancing the information content of purely experimental data. 241 experimental organic crystal structures from the August 2008 issue of Acta Cryst. Section E were energy-minimized in full, including unit-cell parameters. The differences between the experimental and the minimized crystal structures were subjected to statistical analysis. The r.m.s. Cartesian displacement excluding H atoms upon energy minimization with flexible unit-cell parameters is selected as a pertinent indicator of the correctness of a crystal structure. All 241 experimental crystal structures are reproduced very well: the average r.m.s. Cartesian displacement for the 241 crystal structures, including 16 disordered structures, is only 0.095 Å (0.084 Å for the 225 ordered structures). R.m.s. Cartesian displacements above 0.25 Å either indicate incorrect experimental crystal structures or reveal interesting structural features such as exceptionally large temperature effects, incorrectly modelled disorder or symmetry breaking H atoms. After validation, the method is applied to nine examples that are known to be ambiguous or subtly incorrect. |
format | Text |
id | pubmed-2940256 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-29402562010-09-21 Validation of experimental molecular crystal structures with dispersion-corrected density functional theory calculations van de Streek, Jacco Neumann, Marcus A. Acta Crystallogr B Research Papers This paper describes the validation of a dispersion-corrected density functional theory (d-DFT) method for the purpose of assessing the correctness of experimental organic crystal structures and enhancing the information content of purely experimental data. 241 experimental organic crystal structures from the August 2008 issue of Acta Cryst. Section E were energy-minimized in full, including unit-cell parameters. The differences between the experimental and the minimized crystal structures were subjected to statistical analysis. The r.m.s. Cartesian displacement excluding H atoms upon energy minimization with flexible unit-cell parameters is selected as a pertinent indicator of the correctness of a crystal structure. All 241 experimental crystal structures are reproduced very well: the average r.m.s. Cartesian displacement for the 241 crystal structures, including 16 disordered structures, is only 0.095 Å (0.084 Å for the 225 ordered structures). R.m.s. Cartesian displacements above 0.25 Å either indicate incorrect experimental crystal structures or reveal interesting structural features such as exceptionally large temperature effects, incorrectly modelled disorder or symmetry breaking H atoms. After validation, the method is applied to nine examples that are known to be ambiguous or subtly incorrect. International Union of Crystallography 2010-10-01 2010-09-11 /pmc/articles/PMC2940256/ /pubmed/20841921 http://dx.doi.org/10.1107/S0108768110031873 Text en © Jacco van de Streek et al. 2010 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers van de Streek, Jacco Neumann, Marcus A. Validation of experimental molecular crystal structures with dispersion-corrected density functional theory calculations |
title | Validation of experimental molecular crystal structures with dispersion-corrected density functional theory calculations |
title_full | Validation of experimental molecular crystal structures with dispersion-corrected density functional theory calculations |
title_fullStr | Validation of experimental molecular crystal structures with dispersion-corrected density functional theory calculations |
title_full_unstemmed | Validation of experimental molecular crystal structures with dispersion-corrected density functional theory calculations |
title_short | Validation of experimental molecular crystal structures with dispersion-corrected density functional theory calculations |
title_sort | validation of experimental molecular crystal structures with dispersion-corrected density functional theory calculations |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940256/ https://www.ncbi.nlm.nih.gov/pubmed/20841921 http://dx.doi.org/10.1107/S0108768110031873 |
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