Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies

Summary: Genevar (GENe Expression VARiation) is a database and Java tool designed to integrate multiple datasets, and provides analysis and visualization of associations between sequence variation and gene expression. Genevar allows researchers to investigate expression quantitative trait loci (eQTL...

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Detalles Bibliográficos
Autores principales: Yang, Tsun-Po, Beazley, Claude, Montgomery, Stephen B., Dimas, Antigone S., Gutierrez-Arcelus, Maria, Stranger, Barbara E., Deloukas, Panos, Dermitzakis, Emmanouil T.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2944204/
https://www.ncbi.nlm.nih.gov/pubmed/20702402
http://dx.doi.org/10.1093/bioinformatics/btq452
Descripción
Sumario:Summary: Genevar (GENe Expression VARiation) is a database and Java tool designed to integrate multiple datasets, and provides analysis and visualization of associations between sequence variation and gene expression. Genevar allows researchers to investigate expression quantitative trait loci (eQTL) associations within a gene locus of interest in real time. The database and application can be installed on a standard computer in database mode and, in addition, on a server to share discoveries among affiliations or the broader community over the Internet via web services protocols. Availability: http://www.sanger.ac.uk/resources/software/genevar Contact: emmanouil.dermitzakis@unige.ch

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