Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies

Summary: Genevar (GENe Expression VARiation) is a database and Java tool designed to integrate multiple datasets, and provides analysis and visualization of associations between sequence variation and gene expression. Genevar allows researchers to investigate expression quantitative trait loci (eQTL...

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Autores principales: Yang, Tsun-Po, Beazley, Claude, Montgomery, Stephen B., Dimas, Antigone S., Gutierrez-Arcelus, Maria, Stranger, Barbara E., Deloukas, Panos, Dermitzakis, Emmanouil T.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2944204/
https://www.ncbi.nlm.nih.gov/pubmed/20702402
http://dx.doi.org/10.1093/bioinformatics/btq452
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author Yang, Tsun-Po
Beazley, Claude
Montgomery, Stephen B.
Dimas, Antigone S.
Gutierrez-Arcelus, Maria
Stranger, Barbara E.
Deloukas, Panos
Dermitzakis, Emmanouil T.
author_facet Yang, Tsun-Po
Beazley, Claude
Montgomery, Stephen B.
Dimas, Antigone S.
Gutierrez-Arcelus, Maria
Stranger, Barbara E.
Deloukas, Panos
Dermitzakis, Emmanouil T.
author_sort Yang, Tsun-Po
collection PubMed
description Summary: Genevar (GENe Expression VARiation) is a database and Java tool designed to integrate multiple datasets, and provides analysis and visualization of associations between sequence variation and gene expression. Genevar allows researchers to investigate expression quantitative trait loci (eQTL) associations within a gene locus of interest in real time. The database and application can be installed on a standard computer in database mode and, in addition, on a server to share discoveries among affiliations or the broader community over the Internet via web services protocols. Availability: http://www.sanger.ac.uk/resources/software/genevar Contact: emmanouil.dermitzakis@unige.ch
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spelling pubmed-29442042010-09-27 Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies Yang, Tsun-Po Beazley, Claude Montgomery, Stephen B. Dimas, Antigone S. Gutierrez-Arcelus, Maria Stranger, Barbara E. Deloukas, Panos Dermitzakis, Emmanouil T. Bioinformatics Applications Note Summary: Genevar (GENe Expression VARiation) is a database and Java tool designed to integrate multiple datasets, and provides analysis and visualization of associations between sequence variation and gene expression. Genevar allows researchers to investigate expression quantitative trait loci (eQTL) associations within a gene locus of interest in real time. The database and application can be installed on a standard computer in database mode and, in addition, on a server to share discoveries among affiliations or the broader community over the Internet via web services protocols. Availability: http://www.sanger.ac.uk/resources/software/genevar Contact: emmanouil.dermitzakis@unige.ch Oxford University Press 2010-10-01 2010-08-10 /pmc/articles/PMC2944204/ /pubmed/20702402 http://dx.doi.org/10.1093/bioinformatics/btq452 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Yang, Tsun-Po
Beazley, Claude
Montgomery, Stephen B.
Dimas, Antigone S.
Gutierrez-Arcelus, Maria
Stranger, Barbara E.
Deloukas, Panos
Dermitzakis, Emmanouil T.
Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies
title Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies
title_full Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies
title_fullStr Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies
title_full_unstemmed Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies
title_short Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies
title_sort genevar: a database and java application for the analysis and visualization of snp-gene associations in eqtl studies
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2944204/
https://www.ncbi.nlm.nih.gov/pubmed/20702402
http://dx.doi.org/10.1093/bioinformatics/btq452
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