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Draft genome sequence of the ricin-producing oilseed castor bean
Castor bean (Ricinus communis) is an oil crop that belongs to the spurge (Euphorbiaceae) family. Its seeds are the source of castor oil, used for the production of high-quality lubricants due to its high proportion of the unusual fatty acid ricinoleic acid. Castor bean seeds also produce ricin, a hi...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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2010
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2945230/ https://www.ncbi.nlm.nih.gov/pubmed/20729833 http://dx.doi.org/10.1038/nbt.1674 |
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author | Chan, Agnes P. Crabtree, Jonathan Zhao, Qi Lorenzi, Hernan Orvis, Joshua Puiu, Daniela Melake-Berhan, Admasu Jones, Kristine M. Redman, Julia Chen, Grace Cahoon, Edgar B. Gedil, Melaku Stanke, Mario Haas, Brian J. Wortman, Jennifer R. Fraser-Liggett, Claire M. Ravel, Jacques Rabinowicz, Pablo D. |
author_facet | Chan, Agnes P. Crabtree, Jonathan Zhao, Qi Lorenzi, Hernan Orvis, Joshua Puiu, Daniela Melake-Berhan, Admasu Jones, Kristine M. Redman, Julia Chen, Grace Cahoon, Edgar B. Gedil, Melaku Stanke, Mario Haas, Brian J. Wortman, Jennifer R. Fraser-Liggett, Claire M. Ravel, Jacques Rabinowicz, Pablo D. |
author_sort | Chan, Agnes P. |
collection | PubMed |
description | Castor bean (Ricinus communis) is an oil crop that belongs to the spurge (Euphorbiaceae) family. Its seeds are the source of castor oil, used for the production of high-quality lubricants due to its high proportion of the unusual fatty acid ricinoleic acid. Castor bean seeds also produce ricin, a highly toxic ribosome inactivating protein, making castor bean relevant for biosafety. We report here the 4.6X draft genome sequence of castor bean, representing the first reported Euphorbiaceae genome sequence. Our analysis shows that most key castor oil metabolism genes are single-copy while the ricin gene family is larger than previously thought. Comparative genomics analysis suggests the presence of an ancient hexaploidization event that is conserved across the dicotyledonous lineage. |
format | Text |
id | pubmed-2945230 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
record_format | MEDLINE/PubMed |
spelling | pubmed-29452302011-03-01 Draft genome sequence of the ricin-producing oilseed castor bean Chan, Agnes P. Crabtree, Jonathan Zhao, Qi Lorenzi, Hernan Orvis, Joshua Puiu, Daniela Melake-Berhan, Admasu Jones, Kristine M. Redman, Julia Chen, Grace Cahoon, Edgar B. Gedil, Melaku Stanke, Mario Haas, Brian J. Wortman, Jennifer R. Fraser-Liggett, Claire M. Ravel, Jacques Rabinowicz, Pablo D. Nat Biotechnol Article Castor bean (Ricinus communis) is an oil crop that belongs to the spurge (Euphorbiaceae) family. Its seeds are the source of castor oil, used for the production of high-quality lubricants due to its high proportion of the unusual fatty acid ricinoleic acid. Castor bean seeds also produce ricin, a highly toxic ribosome inactivating protein, making castor bean relevant for biosafety. We report here the 4.6X draft genome sequence of castor bean, representing the first reported Euphorbiaceae genome sequence. Our analysis shows that most key castor oil metabolism genes are single-copy while the ricin gene family is larger than previously thought. Comparative genomics analysis suggests the presence of an ancient hexaploidization event that is conserved across the dicotyledonous lineage. 2010-08-22 2010-09 /pmc/articles/PMC2945230/ /pubmed/20729833 http://dx.doi.org/10.1038/nbt.1674 Text en Users may view, print, copy, download and text and data- mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Chan, Agnes P. Crabtree, Jonathan Zhao, Qi Lorenzi, Hernan Orvis, Joshua Puiu, Daniela Melake-Berhan, Admasu Jones, Kristine M. Redman, Julia Chen, Grace Cahoon, Edgar B. Gedil, Melaku Stanke, Mario Haas, Brian J. Wortman, Jennifer R. Fraser-Liggett, Claire M. Ravel, Jacques Rabinowicz, Pablo D. Draft genome sequence of the ricin-producing oilseed castor bean |
title | Draft genome sequence of the ricin-producing oilseed castor bean |
title_full | Draft genome sequence of the ricin-producing oilseed castor bean |
title_fullStr | Draft genome sequence of the ricin-producing oilseed castor bean |
title_full_unstemmed | Draft genome sequence of the ricin-producing oilseed castor bean |
title_short | Draft genome sequence of the ricin-producing oilseed castor bean |
title_sort | draft genome sequence of the ricin-producing oilseed castor bean |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2945230/ https://www.ncbi.nlm.nih.gov/pubmed/20729833 http://dx.doi.org/10.1038/nbt.1674 |
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