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Draft genome sequence of the ricin-producing oilseed castor bean

Castor bean (Ricinus communis) is an oil crop that belongs to the spurge (Euphorbiaceae) family. Its seeds are the source of castor oil, used for the production of high-quality lubricants due to its high proportion of the unusual fatty acid ricinoleic acid. Castor bean seeds also produce ricin, a hi...

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Autores principales: Chan, Agnes P., Crabtree, Jonathan, Zhao, Qi, Lorenzi, Hernan, Orvis, Joshua, Puiu, Daniela, Melake-Berhan, Admasu, Jones, Kristine M., Redman, Julia, Chen, Grace, Cahoon, Edgar B., Gedil, Melaku, Stanke, Mario, Haas, Brian J., Wortman, Jennifer R., Fraser-Liggett, Claire M., Ravel, Jacques, Rabinowicz, Pablo D.
Formato: Texto
Lenguaje:English
Publicado: 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2945230/
https://www.ncbi.nlm.nih.gov/pubmed/20729833
http://dx.doi.org/10.1038/nbt.1674
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author Chan, Agnes P.
Crabtree, Jonathan
Zhao, Qi
Lorenzi, Hernan
Orvis, Joshua
Puiu, Daniela
Melake-Berhan, Admasu
Jones, Kristine M.
Redman, Julia
Chen, Grace
Cahoon, Edgar B.
Gedil, Melaku
Stanke, Mario
Haas, Brian J.
Wortman, Jennifer R.
Fraser-Liggett, Claire M.
Ravel, Jacques
Rabinowicz, Pablo D.
author_facet Chan, Agnes P.
Crabtree, Jonathan
Zhao, Qi
Lorenzi, Hernan
Orvis, Joshua
Puiu, Daniela
Melake-Berhan, Admasu
Jones, Kristine M.
Redman, Julia
Chen, Grace
Cahoon, Edgar B.
Gedil, Melaku
Stanke, Mario
Haas, Brian J.
Wortman, Jennifer R.
Fraser-Liggett, Claire M.
Ravel, Jacques
Rabinowicz, Pablo D.
author_sort Chan, Agnes P.
collection PubMed
description Castor bean (Ricinus communis) is an oil crop that belongs to the spurge (Euphorbiaceae) family. Its seeds are the source of castor oil, used for the production of high-quality lubricants due to its high proportion of the unusual fatty acid ricinoleic acid. Castor bean seeds also produce ricin, a highly toxic ribosome inactivating protein, making castor bean relevant for biosafety. We report here the 4.6X draft genome sequence of castor bean, representing the first reported Euphorbiaceae genome sequence. Our analysis shows that most key castor oil metabolism genes are single-copy while the ricin gene family is larger than previously thought. Comparative genomics analysis suggests the presence of an ancient hexaploidization event that is conserved across the dicotyledonous lineage.
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spelling pubmed-29452302011-03-01 Draft genome sequence of the ricin-producing oilseed castor bean Chan, Agnes P. Crabtree, Jonathan Zhao, Qi Lorenzi, Hernan Orvis, Joshua Puiu, Daniela Melake-Berhan, Admasu Jones, Kristine M. Redman, Julia Chen, Grace Cahoon, Edgar B. Gedil, Melaku Stanke, Mario Haas, Brian J. Wortman, Jennifer R. Fraser-Liggett, Claire M. Ravel, Jacques Rabinowicz, Pablo D. Nat Biotechnol Article Castor bean (Ricinus communis) is an oil crop that belongs to the spurge (Euphorbiaceae) family. Its seeds are the source of castor oil, used for the production of high-quality lubricants due to its high proportion of the unusual fatty acid ricinoleic acid. Castor bean seeds also produce ricin, a highly toxic ribosome inactivating protein, making castor bean relevant for biosafety. We report here the 4.6X draft genome sequence of castor bean, representing the first reported Euphorbiaceae genome sequence. Our analysis shows that most key castor oil metabolism genes are single-copy while the ricin gene family is larger than previously thought. Comparative genomics analysis suggests the presence of an ancient hexaploidization event that is conserved across the dicotyledonous lineage. 2010-08-22 2010-09 /pmc/articles/PMC2945230/ /pubmed/20729833 http://dx.doi.org/10.1038/nbt.1674 Text en Users may view, print, copy, download and text and data- mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Chan, Agnes P.
Crabtree, Jonathan
Zhao, Qi
Lorenzi, Hernan
Orvis, Joshua
Puiu, Daniela
Melake-Berhan, Admasu
Jones, Kristine M.
Redman, Julia
Chen, Grace
Cahoon, Edgar B.
Gedil, Melaku
Stanke, Mario
Haas, Brian J.
Wortman, Jennifer R.
Fraser-Liggett, Claire M.
Ravel, Jacques
Rabinowicz, Pablo D.
Draft genome sequence of the ricin-producing oilseed castor bean
title Draft genome sequence of the ricin-producing oilseed castor bean
title_full Draft genome sequence of the ricin-producing oilseed castor bean
title_fullStr Draft genome sequence of the ricin-producing oilseed castor bean
title_full_unstemmed Draft genome sequence of the ricin-producing oilseed castor bean
title_short Draft genome sequence of the ricin-producing oilseed castor bean
title_sort draft genome sequence of the ricin-producing oilseed castor bean
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2945230/
https://www.ncbi.nlm.nih.gov/pubmed/20729833
http://dx.doi.org/10.1038/nbt.1674
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