A standard variation file format for human genome sequences

Here we describe the Genome Variation Format (GVF) and the 10Gen dataset. GVF, an extension of Generic Feature Format version 3 (GFF3), is a simple tab-delimited format for DNA variant files, which uses Sequence Ontology to describe genome variation data. The 10Gen dataset, ten human genomes in GVF...

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Detalles Bibliográficos
Autores principales: Reese, Martin G, Moore, Barry, Batchelor, Colin, Salas, Fidel, Cunningham, Fiona, Marth, Gabor T, Stein, Lincoln, Flicek, Paul, Yandell, Mark, Eilbeck, Karen
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Method
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2945790/
https://www.ncbi.nlm.nih.gov/pubmed/20796305
http://dx.doi.org/10.1186/gb-2010-11-8-r88
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author Reese, Martin G
Moore, Barry
Batchelor, Colin
Salas, Fidel
Cunningham, Fiona
Marth, Gabor T
Stein, Lincoln
Flicek, Paul
Yandell, Mark
Eilbeck, Karen
author_facet Reese, Martin G
Moore, Barry
Batchelor, Colin
Salas, Fidel
Cunningham, Fiona
Marth, Gabor T
Stein, Lincoln
Flicek, Paul
Yandell, Mark
Eilbeck, Karen
author_sort Reese, Martin G
collection PubMed
description Here we describe the Genome Variation Format (GVF) and the 10Gen dataset. GVF, an extension of Generic Feature Format version 3 (GFF3), is a simple tab-delimited format for DNA variant files, which uses Sequence Ontology to describe genome variation data. The 10Gen dataset, ten human genomes in GVF format, is freely available for community analysis from the Sequence Ontology website and from an Amazon elastic block storage (EBS) snapshot for use in Amazon's EC2 cloud computing environment.
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spelling pubmed-29457902010-09-28 A standard variation file format for human genome sequences Reese, Martin G Moore, Barry Batchelor, Colin Salas, Fidel Cunningham, Fiona Marth, Gabor T Stein, Lincoln Flicek, Paul Yandell, Mark Eilbeck, Karen Genome Biol Method Here we describe the Genome Variation Format (GVF) and the 10Gen dataset. GVF, an extension of Generic Feature Format version 3 (GFF3), is a simple tab-delimited format for DNA variant files, which uses Sequence Ontology to describe genome variation data. The 10Gen dataset, ten human genomes in GVF format, is freely available for community analysis from the Sequence Ontology website and from an Amazon elastic block storage (EBS) snapshot for use in Amazon's EC2 cloud computing environment. BioMed Central 2010 2010-08-26 /pmc/articles/PMC2945790/ /pubmed/20796305 http://dx.doi.org/10.1186/gb-2010-11-8-r88 Text en Copyright ©2010 Reese et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Method
Reese, Martin G
Moore, Barry
Batchelor, Colin
Salas, Fidel
Cunningham, Fiona
Marth, Gabor T
Stein, Lincoln
Flicek, Paul
Yandell, Mark
Eilbeck, Karen
A standard variation file format for human genome sequences
title A standard variation file format for human genome sequences
title_full A standard variation file format for human genome sequences
title_fullStr A standard variation file format for human genome sequences
title_full_unstemmed A standard variation file format for human genome sequences
title_short A standard variation file format for human genome sequences
title_sort standard variation file format for human genome sequences
topic Method
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2945790/
https://www.ncbi.nlm.nih.gov/pubmed/20796305
http://dx.doi.org/10.1186/gb-2010-11-8-r88
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