BioRuby: bioinformatics software for the Ruby programming language

Summary: The BioRuby software toolkit contains a comprehensive set of free development tools and libraries for bioinformatics and molecular biology, written in the Ruby programming language. BioRuby has components for sequence analysis, pathway analysis, protein modelling and phylogenetic analysis;...

Descripción completa

Detalles Bibliográficos
Autores principales: Goto, Naohisa, Prins, Pjotr, Nakao, Mitsuteru, Bonnal, Raoul, Aerts, Jan, Katayama, Toshiaki
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2951089/
https://www.ncbi.nlm.nih.gov/pubmed/20739307
http://dx.doi.org/10.1093/bioinformatics/btq475
_version_ 1782187684145397760
author Goto, Naohisa
Prins, Pjotr
Nakao, Mitsuteru
Bonnal, Raoul
Aerts, Jan
Katayama, Toshiaki
author_facet Goto, Naohisa
Prins, Pjotr
Nakao, Mitsuteru
Bonnal, Raoul
Aerts, Jan
Katayama, Toshiaki
author_sort Goto, Naohisa
collection PubMed
description Summary: The BioRuby software toolkit contains a comprehensive set of free development tools and libraries for bioinformatics and molecular biology, written in the Ruby programming language. BioRuby has components for sequence analysis, pathway analysis, protein modelling and phylogenetic analysis; it supports many widely used data formats and provides easy access to databases, external programs and public web services, including BLAST, KEGG, GenBank, MEDLINE and GO. BioRuby comes with a tutorial, documentation and an interactive environment, which can be used in the shell, and in the web browser. Availability: BioRuby is free and open source software, made available under the Ruby license. BioRuby runs on all platforms that support Ruby, including Linux, Mac OS X and Windows. And, with JRuby, BioRuby runs on the Java Virtual Machine. The source code is available from http://www.bioruby.org/. Contact: katayama@bioruby.org
format Text
id pubmed-2951089
institution National Center for Biotechnology Information
language English
publishDate 2010
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-29510892010-10-08 BioRuby: bioinformatics software for the Ruby programming language Goto, Naohisa Prins, Pjotr Nakao, Mitsuteru Bonnal, Raoul Aerts, Jan Katayama, Toshiaki Bioinformatics Applications Note Summary: The BioRuby software toolkit contains a comprehensive set of free development tools and libraries for bioinformatics and molecular biology, written in the Ruby programming language. BioRuby has components for sequence analysis, pathway analysis, protein modelling and phylogenetic analysis; it supports many widely used data formats and provides easy access to databases, external programs and public web services, including BLAST, KEGG, GenBank, MEDLINE and GO. BioRuby comes with a tutorial, documentation and an interactive environment, which can be used in the shell, and in the web browser. Availability: BioRuby is free and open source software, made available under the Ruby license. BioRuby runs on all platforms that support Ruby, including Linux, Mac OS X and Windows. And, with JRuby, BioRuby runs on the Java Virtual Machine. The source code is available from http://www.bioruby.org/. Contact: katayama@bioruby.org Oxford University Press 2010-10-15 2010-08-25 /pmc/articles/PMC2951089/ /pubmed/20739307 http://dx.doi.org/10.1093/bioinformatics/btq475 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Goto, Naohisa
Prins, Pjotr
Nakao, Mitsuteru
Bonnal, Raoul
Aerts, Jan
Katayama, Toshiaki
BioRuby: bioinformatics software for the Ruby programming language
title BioRuby: bioinformatics software for the Ruby programming language
title_full BioRuby: bioinformatics software for the Ruby programming language
title_fullStr BioRuby: bioinformatics software for the Ruby programming language
title_full_unstemmed BioRuby: bioinformatics software for the Ruby programming language
title_short BioRuby: bioinformatics software for the Ruby programming language
title_sort bioruby: bioinformatics software for the ruby programming language
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2951089/
https://www.ncbi.nlm.nih.gov/pubmed/20739307
http://dx.doi.org/10.1093/bioinformatics/btq475
work_keys_str_mv AT gotonaohisa biorubybioinformaticssoftwarefortherubyprogramminglanguage
AT prinspjotr biorubybioinformaticssoftwarefortherubyprogramminglanguage
AT nakaomitsuteru biorubybioinformaticssoftwarefortherubyprogramminglanguage
AT bonnalraoul biorubybioinformaticssoftwarefortherubyprogramminglanguage
AT aertsjan biorubybioinformaticssoftwarefortherubyprogramminglanguage
AT katayamatoshiaki biorubybioinformaticssoftwarefortherubyprogramminglanguage

Ejemplares similares