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The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function
Proteins that contain the DUF2874 domain constitute a new Pfam family PF11396. Members of this family have predominantly been identified in microbes found in the human gut and oral cavity. The crystal structure of one member of this family, BVU2987 from Bacteroides vulgatus, has been determined, rev...
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| Formato: | Texto |
| Lenguaje: | English |
| Publicado: |
International Union of Crystallography
2010
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2954215/ https://www.ncbi.nlm.nih.gov/pubmed/20944221 http://dx.doi.org/10.1107/S1744309109046788 |
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| author | Das, Debanu Finn, Robert D. Carlton, Dennis Miller, Mitchell D. Abdubek, Polat Astakhova, Tamara Axelrod, Herbert L. Bakolitsa, Constantina Chen, Connie Chiu, Hsiu-Ju Chiu, Michelle Clayton, Thomas Deller, Marc C. Duan, Lian Ellrott, Kyle Ernst, Dustin Farr, Carol L. Feuerhelm, Julie Grant, Joanna C. Grzechnik, Anna Han, Gye Won Jaroszewski, Lukasz Jin, Kevin K. Klock, Heath E. Knuth, Mark W. Kozbial, Piotr Krishna, S. Sri Kumar, Abhinav Marciano, David McMullan, Daniel Morse, Andrew T. Nigoghossian, Edward Nopakun, Amanda Okach, Linda Puckett, Christina Reyes, Ron Rife, Christopher L. Sefcovic, Natasha Tien, Henry J. Trame, Christine B. van den Bedem, Henry Weekes, Dana Wooten, Tiffany Xu, Qingping Hodgson, Keith O. Wooley, John Elsliger, Marc-André Deacon, Ashley M. Godzik, Adam Lesley, Scott A. Wilson, Ian A. |
| author_facet | Das, Debanu Finn, Robert D. Carlton, Dennis Miller, Mitchell D. Abdubek, Polat Astakhova, Tamara Axelrod, Herbert L. Bakolitsa, Constantina Chen, Connie Chiu, Hsiu-Ju Chiu, Michelle Clayton, Thomas Deller, Marc C. Duan, Lian Ellrott, Kyle Ernst, Dustin Farr, Carol L. Feuerhelm, Julie Grant, Joanna C. Grzechnik, Anna Han, Gye Won Jaroszewski, Lukasz Jin, Kevin K. Klock, Heath E. Knuth, Mark W. Kozbial, Piotr Krishna, S. Sri Kumar, Abhinav Marciano, David McMullan, Daniel Morse, Andrew T. Nigoghossian, Edward Nopakun, Amanda Okach, Linda Puckett, Christina Reyes, Ron Rife, Christopher L. Sefcovic, Natasha Tien, Henry J. Trame, Christine B. van den Bedem, Henry Weekes, Dana Wooten, Tiffany Xu, Qingping Hodgson, Keith O. Wooley, John Elsliger, Marc-André Deacon, Ashley M. Godzik, Adam Lesley, Scott A. Wilson, Ian A. |
| author_sort | Das, Debanu |
| collection | PubMed |
| description | Proteins that contain the DUF2874 domain constitute a new Pfam family PF11396. Members of this family have predominantly been identified in microbes found in the human gut and oral cavity. The crystal structure of one member of this family, BVU2987 from Bacteroides vulgatus, has been determined, revealing a β-lactamase inhibitor protein-like structure with a tandem repeat of domains. Sequence analysis and structural comparisons reveal that BVU2987 and other DUF2874 proteins are related to β-lactamase inhibitor protein, PepSY and SmpA_OmlA proteins and hence are likely to function as inhibitory proteins. |
| format | Text |
| id | pubmed-2954215 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2010 |
| publisher | International Union of Crystallography |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-29542152010-10-27 The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function Das, Debanu Finn, Robert D. Carlton, Dennis Miller, Mitchell D. Abdubek, Polat Astakhova, Tamara Axelrod, Herbert L. Bakolitsa, Constantina Chen, Connie Chiu, Hsiu-Ju Chiu, Michelle Clayton, Thomas Deller, Marc C. Duan, Lian Ellrott, Kyle Ernst, Dustin Farr, Carol L. Feuerhelm, Julie Grant, Joanna C. Grzechnik, Anna Han, Gye Won Jaroszewski, Lukasz Jin, Kevin K. Klock, Heath E. Knuth, Mark W. Kozbial, Piotr Krishna, S. Sri Kumar, Abhinav Marciano, David McMullan, Daniel Morse, Andrew T. Nigoghossian, Edward Nopakun, Amanda Okach, Linda Puckett, Christina Reyes, Ron Rife, Christopher L. Sefcovic, Natasha Tien, Henry J. Trame, Christine B. van den Bedem, Henry Weekes, Dana Wooten, Tiffany Xu, Qingping Hodgson, Keith O. Wooley, John Elsliger, Marc-André Deacon, Ashley M. Godzik, Adam Lesley, Scott A. Wilson, Ian A. Acta Crystallogr Sect F Struct Biol Cryst Commun Human Gut Microbiome Proteins that contain the DUF2874 domain constitute a new Pfam family PF11396. Members of this family have predominantly been identified in microbes found in the human gut and oral cavity. The crystal structure of one member of this family, BVU2987 from Bacteroides vulgatus, has been determined, revealing a β-lactamase inhibitor protein-like structure with a tandem repeat of domains. Sequence analysis and structural comparisons reveal that BVU2987 and other DUF2874 proteins are related to β-lactamase inhibitor protein, PepSY and SmpA_OmlA proteins and hence are likely to function as inhibitory proteins. International Union of Crystallography 2010-03-05 /pmc/articles/PMC2954215/ /pubmed/20944221 http://dx.doi.org/10.1107/S1744309109046788 Text en © Das et al. 2010 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
| spellingShingle | Human Gut Microbiome Das, Debanu Finn, Robert D. Carlton, Dennis Miller, Mitchell D. Abdubek, Polat Astakhova, Tamara Axelrod, Herbert L. Bakolitsa, Constantina Chen, Connie Chiu, Hsiu-Ju Chiu, Michelle Clayton, Thomas Deller, Marc C. Duan, Lian Ellrott, Kyle Ernst, Dustin Farr, Carol L. Feuerhelm, Julie Grant, Joanna C. Grzechnik, Anna Han, Gye Won Jaroszewski, Lukasz Jin, Kevin K. Klock, Heath E. Knuth, Mark W. Kozbial, Piotr Krishna, S. Sri Kumar, Abhinav Marciano, David McMullan, Daniel Morse, Andrew T. Nigoghossian, Edward Nopakun, Amanda Okach, Linda Puckett, Christina Reyes, Ron Rife, Christopher L. Sefcovic, Natasha Tien, Henry J. Trame, Christine B. van den Bedem, Henry Weekes, Dana Wooten, Tiffany Xu, Qingping Hodgson, Keith O. Wooley, John Elsliger, Marc-André Deacon, Ashley M. Godzik, Adam Lesley, Scott A. Wilson, Ian A. The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function |
| title | The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function |
| title_full | The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function |
| title_fullStr | The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function |
| title_full_unstemmed | The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function |
| title_short | The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function |
| title_sort | structure of bvu2987 from bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function |
| topic | Human Gut Microbiome |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2954215/ https://www.ncbi.nlm.nih.gov/pubmed/20944221 http://dx.doi.org/10.1107/S1744309109046788 |
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