Cargando…

Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform

BACKGROUND: Complete chloroplast genome sequences provide a valuable source of molecular markers for studies in molecular ecology and evolution of plants. To obtain complete genome sequences, recent studies have made use of the polymerase chain reaction to amplify overlapping fragments from conserve...

Descripción completa

Detalles Bibliográficos
Autores principales:	Atherton, Robin A, McComish, Bennet J, Shepherd, Lara D, Berry, Lorraine A, Albert, Nick W, Lockhart, Peter J
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Methodology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2956718/ https://www.ncbi.nlm.nih.gov/pubmed/20920211 http://dx.doi.org/10.1186/1746-4811-6-22

Ejemplares similares

An improved method of constructing degradome library suitable for sequencing using Illumina platform
por: Li, Yong-Fang, et al.
Publicado: (2019)

Modified SureSelect(QXT) Target Enrichment Protocol for Illumina Multiplexed Sequencing of FFPE Samples
por: Rosa-Rosa, J. M., et al.
Publicado: (2018)

Comparative performance of the BGISEQ-500 and Illumina HiSeq4000 sequencing platforms for transcriptome analysis in plants
por: Zhu, Fu-Yuan, et al.
Publicado: (2018)

Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten
por: Nair, Shalima S., et al.
Publicado: (2018)

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
por: Fadrosh, Douglas W, et al.
Publicado: (2014)

Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
por: Ritchie, Matthew E, et al.
Publicado: (2011)

LUMI-PCR: an Illumina platform ligation-mediated PCR protocol for integration site cloning, provides molecular quantitation of integration sites
por: Dawes, Joanna C., et al.
Publicado: (2020)

Reproducibility of Illumina platform deep sequencing errors allows accurate determination of DNA barcodes in cells
por: Beltman, Joost B., et al.
Publicado: (2016)

A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform
por: de Muinck, Eric J., et al.
Publicado: (2017)

Index-Free De Novo Assembly and Deconvolution of Mixed Mitochondrial Genomes
por: McComish, Bennet J., et al.
Publicado: (2010)

Data quality of whole genome bisulfite sequencing on Illumina platforms
por: Raine, Amanda, et al.
Publicado: (2018)

The Association Between Vitamin D and Multiple Sclerosis Risk: 1,25(OH)(2)D(3) Induces Super-Enhancers Bound by VDR
por: Lu, Ming, et al.
Publicado: (2019)

Identification of methylation states of DNA regions for Illumina methylation BeadChip
por: Luo, Ximei, et al.
Publicado: (2020)

MethylToSNP: identifying SNPs in Illumina DNA methylation array data
por: LaBarre, Brenna A., et al.
Publicado: (2019)

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
por: Staaf, Johan, et al.
Publicado: (2008)

Successful use of whole genome amplified DNA from multiple source types for high-density Illumina SNP microarrays
por: Dagnall, Casey L., et al.
Publicado: (2018)

Whole-Genome Sequences of Pantoea agglomerans BL3, Pseudomonas fluorescens BL, and Pseudomonas stutzeri CM14, Isolated from Hops (Humulus lupulus)
por: Sevigny, Joseph L., et al.
Publicado: (2019)

Identifying Genetic Risk Factors for Diabetic Macular Edema and the Response to Treatment
por: Gurung, Rajya L., et al.
Publicado: (2020)

Comparison of pre-processing methodologies for Illumina 450k methylation array data in familial analyses
por: Cazaly, Emma, et al.
Publicado: (2016)

Multiplexed Illumina sequencing libraries from picogram quantities of DNA
por: Bowman, Sarah K, et al.
Publicado: (2013)

CRISPR-Cas9 enrichment and long read sequencing for fine mapping in plants
por: López-Girona, Elena, et al.
Publicado: (2020)

Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing
por: Toh, Hidehiro, et al.
Publicado: (2017)

Whole-Genome Sequencing of Porcine Epidemic Diarrhea Virus by Illumina MiSeq Platform
por: Wang, Leyi, et al.
Publicado: (2015)

Batch-effect detection, correction and characterisation in Illumina HumanMethylation450 and MethylationEPIC BeadChip array data
por: Ross, Jason P., et al.
Publicado: (2022)

Illumina WG-6 BeadChip strips should be normalized separately
por: Shi, Wei, et al.
Publicado: (2009)

A new model calling procedure for Illumina BeadArray data
por: Li, Gengxin
Publicado: (2016)

Quality filtering of Illumina index reads mitigates sample cross-talk
por: Wright, Erik Scott, et al.
Publicado: (2016)

Joining Illumina paired-end reads for classifying phylogenetic marker sequences
por: Liu, Tsunglin, et al.
Publicado: (2020)

Comparing vision and macular thickness in neovascular age-related macular degeneration, diabetic macular oedema and retinal vein occlusion patients treated with intravitreal antivascular endothelial growth factor injections in clinical practice
por: Gurung, Rajya L, et al.
Publicado: (2021)

Optimization of parasite DNA enrichment approaches to generate whole genome sequencing data for Plasmodium falciparum from low parasitaemia samples
por: Shah, Zalak, et al.
Publicado: (2020)

Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes
por: Oyola, Samuel O, et al.
Publicado: (2012)

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis
por: Wu, Liyou, et al.
Publicado: (2015)

Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction
por: Herbert, Zachary T., et al.
Publicado: (2018)

A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters
por: Chen, Yun-Ru, et al.
Publicado: (2012)

Evolutionary relationships and divergence times among the native rats of Australia
por: Robins, Judith H, et al.
Publicado: (2010)

Biosynthesis of gold nanoparticles using chloroplasts
por: Zhang, Yi Xia, et al.
Publicado: (2011)

Influence of antibiotic treatment on the detection of S. aureus in whole blood following pathogen enrichment
por: Pilecky, Matthias, et al.
Publicado: (2019)

Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data
por: Jervis-Bardy, Jake, et al.
Publicado: (2015)

Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets
por: Xu, Xiao, et al.
Publicado: (2013)

Data analysis issues for allele-specific expression using Illumina's GoldenGate assay
por: Ritchie, Matthew E, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_faomf3uqjlb72dvoqdk8g1rrji