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Methyl 6-methoxy­carbonyl­methyl-2-oxo-4-phenyl-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate

The title compound, C(15)H(16)N(2)O(5), belongs to the class of monastrol-type anti-­cancer agents and was selected for crystal structure determination in order to determine the conformational details needed for subsequent structure–activity relationship studies. The central tetra­hydro­pyrimidine r...

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Detalles Bibliográficos
Autores principales: Kettmann, Viktor, Světlík, Jan, Veizerová, Lucia
Formato: Texto
Lenguaje:English
Publicado: International Union of Crystallography 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2960603/
https://www.ncbi.nlm.nih.gov/pubmed/21201756
http://dx.doi.org/10.1107/S1600536808026135
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author Kettmann, Viktor
Světlík, Jan
Veizerová, Lucia
author_facet Kettmann, Viktor
Světlík, Jan
Veizerová, Lucia
author_sort Kettmann, Viktor
collection PubMed
description The title compound, C(15)H(16)N(2)O(5), belongs to the class of monastrol-type anti-­cancer agents and was selected for crystal structure determination in order to determine the conformational details needed for subsequent structure–activity relationship studies. The central tetra­hydro­pyrimidine ring has a flat-envelope conformation. The 4-phenyl group occupies a pseudo-axial position and is inclined at an angle of ca 90° to the mean plane of the heterocyclic ring. Of the two methyl ester groups, one (in the 5-position) is in a coplanar and the other (in the 6-position) in a perpendicular orientation with respect to the heterocyclic plane. The coplanar 5-ester group has its carbonyl bond oriented cis with respect to the pyrimidine C=C double bond. By comparison of the structural results for the present compound with those determined previously for its diethyl analogue, we have identified the mol­ecular factors which control the dual course of the Biginelli reaction with salicylaldehyde. The crystal structure is dominated by two hydrogen bonds which link the mol­ecules into chains of dimers.
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spelling pubmed-29606032010-12-30 Methyl 6-methoxy­carbonyl­methyl-2-oxo-4-phenyl-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate Kettmann, Viktor Světlík, Jan Veizerová, Lucia Acta Crystallogr Sect E Struct Rep Online Organic Papers The title compound, C(15)H(16)N(2)O(5), belongs to the class of monastrol-type anti-­cancer agents and was selected for crystal structure determination in order to determine the conformational details needed for subsequent structure–activity relationship studies. The central tetra­hydro­pyrimidine ring has a flat-envelope conformation. The 4-phenyl group occupies a pseudo-axial position and is inclined at an angle of ca 90° to the mean plane of the heterocyclic ring. Of the two methyl ester groups, one (in the 5-position) is in a coplanar and the other (in the 6-position) in a perpendicular orientation with respect to the heterocyclic plane. The coplanar 5-ester group has its carbonyl bond oriented cis with respect to the pyrimidine C=C double bond. By comparison of the structural results for the present compound with those determined previously for its diethyl analogue, we have identified the mol­ecular factors which control the dual course of the Biginelli reaction with salicylaldehyde. The crystal structure is dominated by two hydrogen bonds which link the mol­ecules into chains of dimers. International Union of Crystallography 2008-08-16 /pmc/articles/PMC2960603/ /pubmed/21201756 http://dx.doi.org/10.1107/S1600536808026135 Text en © Kettmann et al. 2008 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Organic Papers
Kettmann, Viktor
Světlík, Jan
Veizerová, Lucia
Methyl 6-methoxy­carbonyl­methyl-2-oxo-4-phenyl-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate
title Methyl 6-methoxy­carbonyl­methyl-2-oxo-4-phenyl-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate
title_full Methyl 6-methoxy­carbonyl­methyl-2-oxo-4-phenyl-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate
title_fullStr Methyl 6-methoxy­carbonyl­methyl-2-oxo-4-phenyl-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate
title_full_unstemmed Methyl 6-methoxy­carbonyl­methyl-2-oxo-4-phenyl-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate
title_short Methyl 6-methoxy­carbonyl­methyl-2-oxo-4-phenyl-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate
title_sort methyl 6-methoxy­carbonyl­methyl-2-oxo-4-phenyl-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate
topic Organic Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2960603/
https://www.ncbi.nlm.nih.gov/pubmed/21201756
http://dx.doi.org/10.1107/S1600536808026135
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AT svetlikjan methyl6methoxycarbonylmethyl2oxo4phenyl1234tetrahydropyrimidine5carboxylate
AT veizerovalucia methyl6methoxycarbonylmethyl2oxo4phenyl1234tetrahydropyrimidine5carboxylate