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Hypolithic Microbial Community of Quartz Pavement in the High-Altitude Tundra of Central Tibet

The hypolithic microbial community associated with quartz pavement at a high-altitude tundra location in central Tibet is described. A small-scale ecological survey indicated that 36% of quartz rocks were colonized. Community profiling using terminal restriction fragment length polymorphism revealed...

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Autores principales: Wong, Fiona K. Y., Lacap, Donnabella C., Lau, Maggie C. Y., Aitchison, J. C., Cowan, Donald A., Pointing, Stephen B.
Formato: Texto
Lenguaje:English
Publicado: Springer-Verlag 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2974210/
https://www.ncbi.nlm.nih.gov/pubmed/20336290
http://dx.doi.org/10.1007/s00248-010-9653-2
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author Wong, Fiona K. Y.
Lacap, Donnabella C.
Lau, Maggie C. Y.
Aitchison, J. C.
Cowan, Donald A.
Pointing, Stephen B.
author_facet Wong, Fiona K. Y.
Lacap, Donnabella C.
Lau, Maggie C. Y.
Aitchison, J. C.
Cowan, Donald A.
Pointing, Stephen B.
author_sort Wong, Fiona K. Y.
collection PubMed
description The hypolithic microbial community associated with quartz pavement at a high-altitude tundra location in central Tibet is described. A small-scale ecological survey indicated that 36% of quartz rocks were colonized. Community profiling using terminal restriction fragment length polymorphism revealed no significant difference in community structure among a number of colonized rocks. Real-time quantitative PCR and phylogenetic analysis of environmental phylotypes obtained from clone libraries were used to elucidate community structure across all domains. The hypolithon was dominated by cyanobacterial phylotypes (73%) with relatively low frequencies of other bacterial phylotypes, largely represented by the chloroflexi, actinobacteria, and bacteriodetes. Unidentified crenarchaeal phylotypes accounted for 4% of recoverable phylotypes, while algae, fungi, and mosses were indicated by a small fraction of recoverable phylotypes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00248-010-9653-2) contains supplementary material, which is available to authorized users.
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spelling pubmed-29742102010-11-29 Hypolithic Microbial Community of Quartz Pavement in the High-Altitude Tundra of Central Tibet Wong, Fiona K. Y. Lacap, Donnabella C. Lau, Maggie C. Y. Aitchison, J. C. Cowan, Donald A. Pointing, Stephen B. Microb Ecol Environmental Microbiology The hypolithic microbial community associated with quartz pavement at a high-altitude tundra location in central Tibet is described. A small-scale ecological survey indicated that 36% of quartz rocks were colonized. Community profiling using terminal restriction fragment length polymorphism revealed no significant difference in community structure among a number of colonized rocks. Real-time quantitative PCR and phylogenetic analysis of environmental phylotypes obtained from clone libraries were used to elucidate community structure across all domains. The hypolithon was dominated by cyanobacterial phylotypes (73%) with relatively low frequencies of other bacterial phylotypes, largely represented by the chloroflexi, actinobacteria, and bacteriodetes. Unidentified crenarchaeal phylotypes accounted for 4% of recoverable phylotypes, while algae, fungi, and mosses were indicated by a small fraction of recoverable phylotypes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00248-010-9653-2) contains supplementary material, which is available to authorized users. Springer-Verlag 2010-03-25 2010 /pmc/articles/PMC2974210/ /pubmed/20336290 http://dx.doi.org/10.1007/s00248-010-9653-2 Text en © The Author(s) 2010 https://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.
spellingShingle Environmental Microbiology
Wong, Fiona K. Y.
Lacap, Donnabella C.
Lau, Maggie C. Y.
Aitchison, J. C.
Cowan, Donald A.
Pointing, Stephen B.
Hypolithic Microbial Community of Quartz Pavement in the High-Altitude Tundra of Central Tibet
title Hypolithic Microbial Community of Quartz Pavement in the High-Altitude Tundra of Central Tibet
title_full Hypolithic Microbial Community of Quartz Pavement in the High-Altitude Tundra of Central Tibet
title_fullStr Hypolithic Microbial Community of Quartz Pavement in the High-Altitude Tundra of Central Tibet
title_full_unstemmed Hypolithic Microbial Community of Quartz Pavement in the High-Altitude Tundra of Central Tibet
title_short Hypolithic Microbial Community of Quartz Pavement in the High-Altitude Tundra of Central Tibet
title_sort hypolithic microbial community of quartz pavement in the high-altitude tundra of central tibet
topic Environmental Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2974210/
https://www.ncbi.nlm.nih.gov/pubmed/20336290
http://dx.doi.org/10.1007/s00248-010-9653-2
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