OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data

Summary: OmicsAnalyzer is a Cytoscape plug-in for visual omics-based network analysis that (i) integrates hetero-omics data for one or more species; (ii) performs statistical tests on the integrated datasets; and (iii) visualizes results in a network context. Availability: Implemented in Java, Omics...

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Detalles Bibliográficos
Autores principales: Xia, Tian, Hemert, John V., Dickerson, Julie A.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2982160/
https://www.ncbi.nlm.nih.gov/pubmed/20947524
http://dx.doi.org/10.1093/bioinformatics/btq583
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author Xia, Tian
Hemert, John V.
Dickerson, Julie A.
author_facet Xia, Tian
Hemert, John V.
Dickerson, Julie A.
author_sort Xia, Tian
collection PubMed
description Summary: OmicsAnalyzer is a Cytoscape plug-in for visual omics-based network analysis that (i) integrates hetero-omics data for one or more species; (ii) performs statistical tests on the integrated datasets; and (iii) visualizes results in a network context. Availability: Implemented in Java, OmicsAnalyzer runs with Cytoscape 2.6 and 2.7. Binaries, documentation and video walkthroughs are freely available at http://vrac.iastate.edu/~jlv/omicsanalyzer/ Contact: julied@iastate.edu; netscape@iastate.edu
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spelling pubmed-29821602010-11-16 OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data Xia, Tian Hemert, John V. Dickerson, Julie A. Bioinformatics Applications Note Summary: OmicsAnalyzer is a Cytoscape plug-in for visual omics-based network analysis that (i) integrates hetero-omics data for one or more species; (ii) performs statistical tests on the integrated datasets; and (iii) visualizes results in a network context. Availability: Implemented in Java, OmicsAnalyzer runs with Cytoscape 2.6 and 2.7. Binaries, documentation and video walkthroughs are freely available at http://vrac.iastate.edu/~jlv/omicsanalyzer/ Contact: julied@iastate.edu; netscape@iastate.edu Oxford University Press 2010-12-01 2010-10-14 /pmc/articles/PMC2982160/ /pubmed/20947524 http://dx.doi.org/10.1093/bioinformatics/btq583 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Xia, Tian
Hemert, John V.
Dickerson, Julie A.
OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data
title OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data
title_full OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data
title_fullStr OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data
title_full_unstemmed OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data
title_short OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data
title_sort omicsanalyzer: a cytoscape plug-in suite for modeling omics data
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2982160/
https://www.ncbi.nlm.nih.gov/pubmed/20947524
http://dx.doi.org/10.1093/bioinformatics/btq583
work_keys_str_mv AT xiatian omicsanalyzeracytoscapepluginsuiteformodelingomicsdata
AT hemertjohnv omicsanalyzeracytoscapepluginsuiteformodelingomicsdata
AT dickersonjuliea omicsanalyzeracytoscapepluginsuiteformodelingomicsdata

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