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The exchangeability of shape

BACKGROUND: Landmark based geometric morphometrics (GM) allows the quantitative comparison of organismal shapes. When applied to systematics, it is able to score shape changes which often are undetectable by traditional morphological studies and even by classical morphometric approaches. It has thus...

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Autores principales: Dujardin, Jean-Pierre AL, Kaba, Dramane, Henry, Amy B
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2987866/
https://www.ncbi.nlm.nih.gov/pubmed/20964872
http://dx.doi.org/10.1186/1756-0500-3-266
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author Dujardin, Jean-Pierre AL
Kaba, Dramane
Henry, Amy B
author_facet Dujardin, Jean-Pierre AL
Kaba, Dramane
Henry, Amy B
author_sort Dujardin, Jean-Pierre AL
collection PubMed
description BACKGROUND: Landmark based geometric morphometrics (GM) allows the quantitative comparison of organismal shapes. When applied to systematics, it is able to score shape changes which often are undetectable by traditional morphological studies and even by classical morphometric approaches. It has thus become a fast and low cost candidate to identify cryptic species. Due to inherent mathematical properties, shape variables derived from one set of coordinates cannot be compared with shape variables derived from another set. Raw coordinates which produce these shape variables could be used for data exchange, however they contain measurement error. The latter may represent a significant obstacle when the objective is to distinguish very similar species. RESULTS: We show here that a single user derived dataset produces much less classification error than a multiple one. The question then becomes how to circumvent the lack of exchangeability of shape variables while preserving a single user dataset. A solution to this question could lead to the creation of a relatively fast and inexpensive systematic tool adapted for the recognition of cryptic species. CONCLUSIONS: To preserve both exchangeability of shape and a single user derived dataset, our suggestion is to create a free access bank of reference images from which one can produce raw coordinates and use them for comparison with external specimens. Thus, we propose an alternative geometric descriptive system that separates 2-D data gathering and analyzes.
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spelling pubmed-29878662010-11-19 The exchangeability of shape Dujardin, Jean-Pierre AL Kaba, Dramane Henry, Amy B BMC Res Notes Short Report BACKGROUND: Landmark based geometric morphometrics (GM) allows the quantitative comparison of organismal shapes. When applied to systematics, it is able to score shape changes which often are undetectable by traditional morphological studies and even by classical morphometric approaches. It has thus become a fast and low cost candidate to identify cryptic species. Due to inherent mathematical properties, shape variables derived from one set of coordinates cannot be compared with shape variables derived from another set. Raw coordinates which produce these shape variables could be used for data exchange, however they contain measurement error. The latter may represent a significant obstacle when the objective is to distinguish very similar species. RESULTS: We show here that a single user derived dataset produces much less classification error than a multiple one. The question then becomes how to circumvent the lack of exchangeability of shape variables while preserving a single user dataset. A solution to this question could lead to the creation of a relatively fast and inexpensive systematic tool adapted for the recognition of cryptic species. CONCLUSIONS: To preserve both exchangeability of shape and a single user derived dataset, our suggestion is to create a free access bank of reference images from which one can produce raw coordinates and use them for comparison with external specimens. Thus, we propose an alternative geometric descriptive system that separates 2-D data gathering and analyzes. BioMed Central 2010-10-22 /pmc/articles/PMC2987866/ /pubmed/20964872 http://dx.doi.org/10.1186/1756-0500-3-266 Text en Copyright ©2010 Dujardin et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Report
Dujardin, Jean-Pierre AL
Kaba, Dramane
Henry, Amy B
The exchangeability of shape
title The exchangeability of shape
title_full The exchangeability of shape
title_fullStr The exchangeability of shape
title_full_unstemmed The exchangeability of shape
title_short The exchangeability of shape
title_sort exchangeability of shape
topic Short Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2987866/
https://www.ncbi.nlm.nih.gov/pubmed/20964872
http://dx.doi.org/10.1186/1756-0500-3-266
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