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Novel Use of Matched Filtering for Synaptic Event Detection and Extraction

Efficient and dependable methods for detection and measurement of synaptic events are important for studies of synaptic physiology and neuronal circuit connectivity. As the published methods with detection algorithms based upon amplitude thresholding and fixed or scaled template comparisons are of l...

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Detalles Bibliográficos
Autores principales: Shi, Yulin, Nenadic, Zoran, Xu, Xiangmin
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2991367/
https://www.ncbi.nlm.nih.gov/pubmed/21124805
http://dx.doi.org/10.1371/journal.pone.0015517
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author Shi, Yulin
Nenadic, Zoran
Xu, Xiangmin
author_facet Shi, Yulin
Nenadic, Zoran
Xu, Xiangmin
author_sort Shi, Yulin
collection PubMed
description Efficient and dependable methods for detection and measurement of synaptic events are important for studies of synaptic physiology and neuronal circuit connectivity. As the published methods with detection algorithms based upon amplitude thresholding and fixed or scaled template comparisons are of limited utility for detection of signals with variable amplitudes and superimposed events that have complex waveforms, previous techniques are not applicable for detection of evoked synaptic events in photostimulation and other similar experimental situations. Here we report on a novel technique that combines the design of a bank of approximate matched filters with the detection and estimation theory to automatically detect and extract photostimluation-evoked excitatory postsynaptic currents (EPSCs) from individually recorded neurons in cortical circuit mapping experiments. The sensitivity and specificity of the method were evaluated on both simulated and experimental data, with its performance comparable to that of visual event detection performed by human operators. This new technique was applied to quantify and compare the EPSCs obtained from excitatory pyramidal cells and fast-spiking interneurons. In addition, our technique has been further applied to the detection and analysis of inhibitory postsynaptic current (IPSC) responses. Given the general purpose of our matched filtering and signal recognition algorithms, we expect that our technique can be appropriately modified and applied to detect and extract other types of electrophysiological and optical imaging signals.
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spelling pubmed-29913672010-12-01 Novel Use of Matched Filtering for Synaptic Event Detection and Extraction Shi, Yulin Nenadic, Zoran Xu, Xiangmin PLoS One Research Article Efficient and dependable methods for detection and measurement of synaptic events are important for studies of synaptic physiology and neuronal circuit connectivity. As the published methods with detection algorithms based upon amplitude thresholding and fixed or scaled template comparisons are of limited utility for detection of signals with variable amplitudes and superimposed events that have complex waveforms, previous techniques are not applicable for detection of evoked synaptic events in photostimulation and other similar experimental situations. Here we report on a novel technique that combines the design of a bank of approximate matched filters with the detection and estimation theory to automatically detect and extract photostimluation-evoked excitatory postsynaptic currents (EPSCs) from individually recorded neurons in cortical circuit mapping experiments. The sensitivity and specificity of the method were evaluated on both simulated and experimental data, with its performance comparable to that of visual event detection performed by human operators. This new technique was applied to quantify and compare the EPSCs obtained from excitatory pyramidal cells and fast-spiking interneurons. In addition, our technique has been further applied to the detection and analysis of inhibitory postsynaptic current (IPSC) responses. Given the general purpose of our matched filtering and signal recognition algorithms, we expect that our technique can be appropriately modified and applied to detect and extract other types of electrophysiological and optical imaging signals. Public Library of Science 2010-11-24 /pmc/articles/PMC2991367/ /pubmed/21124805 http://dx.doi.org/10.1371/journal.pone.0015517 Text en Shi et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Shi, Yulin
Nenadic, Zoran
Xu, Xiangmin
Novel Use of Matched Filtering for Synaptic Event Detection and Extraction
title Novel Use of Matched Filtering for Synaptic Event Detection and Extraction
title_full Novel Use of Matched Filtering for Synaptic Event Detection and Extraction
title_fullStr Novel Use of Matched Filtering for Synaptic Event Detection and Extraction
title_full_unstemmed Novel Use of Matched Filtering for Synaptic Event Detection and Extraction
title_short Novel Use of Matched Filtering for Synaptic Event Detection and Extraction
title_sort novel use of matched filtering for synaptic event detection and extraction
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2991367/
https://www.ncbi.nlm.nih.gov/pubmed/21124805
http://dx.doi.org/10.1371/journal.pone.0015517
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