Cargando…

Functional analysis of the SRV-1 RNA frameshifting pseudoknot

Simian retrovirus type-1 uses programmed ribosomal frameshifting to control expression of the Gag-Pol polyprotein from overlapping gag and pol open-reading frames. The frameshifting signal consists of a heptanucleotide slippery sequence and a downstream-located 12-base pair pseudoknot. The solution...

Descripción completa

Detalles Bibliográficos
Autores principales:	Olsthoorn, René C. L., Reumerman, Richard, Hilbers, Cornelis W., Pleij, Cornelis W. A., Heus, Hans A.
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2010
Materias:	RNA
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2995055/ https://www.ncbi.nlm.nih.gov/pubmed/20639537 http://dx.doi.org/10.1093/nar/gkq629

Ejemplares similares

Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting
por: Michiels, Paul J.A, et al.
Publicado: (2001)

Stem–loop structures can effectively substitute for an RNA pseudoknot in −1 ribosomal frameshifting
por: Yu, Chien-Hung, et al.
Publicado: (2011)

RNA pseudoknots
por: Pleij, Cornelis W.A.
Publicado: (1994)

Mechanical unfolding kinetics of the SRV-1 gag-pro mRNA pseudoknot: possible implications for −1 ribosomal frameshifting stimulation
por: Zhong, Zhensheng, et al.
Publicado: (2016)

RNA pseudoknots: Translational frameshifting and readthrough on viral RNAs
por: Ten Dam, Edwin B., et al.
Publicado: (1990)

Ensemble simulations: folding, unfolding and misfolding of a high-efficiency frameshifting RNA pseudoknot
por: Q. Nguyen, Khai K., et al.
Publicado: (2017)

Coordination among tertiary base pairs results in an efficient frameshift-stimulating RNA pseudoknot
por: Chen, Yu-Ting, et al.
Publicado: (2017)

Stimulation of ribosomal frameshifting by RNA G-quadruplex structures
por: Yu, Chien-Hung, et al.
Publicado: (2014)

An intermolecular RNA triplex provides insight into structural determinants for the pseudoknot stimulator of −1 ribosomal frameshifting
por: Chou, Ming-Yuan, et al.
Publicado: (2010)

Stimulation of ribosomal frameshifting by antisense LNA
por: Yu, Chien-Hung, et al.
Publicado: (2010)

Investigating the correlation between Xrn1-resistant RNAs and frameshifter pseudoknots
por: Dilweg, Ivar W., et al.
Publicado: (2023)

Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1.
por: ten Dam, E, et al.
Publicado: (1994)

Attenuation of loop-receptor interactions with pseudoknot formation
por: Afonin, Kirill A., et al.
Publicado: (2012)

Structural complexity of Dengue virus untranslated regions: cis-acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome
por: Sztuba-Solinska, Joanna, et al.
Publicado: (2013)

Frameshifting RNA pseudoknots: Structure and mechanism
por: Giedroc, David P., et al.
Publicado: (2009)

RNA pseudoknots downstream of the frameshift sites of retroviruses
por: Shu-Yun Le, et al.
Publicado: (1991)

McGenus: a Monte Carlo algorithm to predict RNA secondary structures with pseudoknots
por: Bon, Michaël, et al.
Publicado: (2013)

G-quadruplexes within prion mRNA: the missing link in prion disease?
por: Olsthoorn, René C.L.
Publicado: (2014)

Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates
por: Ulyanov, Nikolai B., et al.
Publicado: (2007)

RNA dimerization plays a role in ribosomal frameshifting of the SARS coronavirus
por: Ishimaru, Daniella, et al.
Publicado: (2013)

Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting
por: Giedroc, David P, et al.
Publicado: (2000)

Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome
por: Segerstolpe, Åsa, et al.
Publicado: (2013)

The many paths to frameshifting: kinetic modelling and analysis of the effects of different elongation steps on programmed –1 ribosomal frameshifting
por: Liao, Pei-Yu, et al.
Publicado: (2011)

Protein unties the pseudoknot: S1-mediated unfolding of RNA higher order structure
por: Lund, Paul E, et al.
Publicado: (2020)

A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting
por: Namy, Olivier, et al.
Publicado: (2006)

Antisense-induced ribosomal frameshifting
por: Henderson, Clark M., et al.
Publicado: (2006)

Spacer-length dependence of programmed −1 or −2 ribosomal frameshifting on a U(6)A heptamer supports a role for messenger RNA (mRNA) tension in frameshifting
por: Lin, Zhaoru, et al.
Publicado: (2012)

An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli
por: Romilly, Cédric, et al.
Publicado: (2020)

Curli synthesis and biofilm formation in enteric bacteria are controlled by a dynamic small RNA module made up of a pseudoknot assisted by an RNA chaperone
por: Bordeau, Valérie, et al.
Publicado: (2014)

New Frameshifting Pseudoknot Found in SARS Virus
Publicado: (2005)

Interaction of the HIV-1 frameshift signal with the ribosome
por: Mazauric, Marie-Hélène, et al.
Publicado: (2009)

Mutational analysis of the RNA pseudoknot component of a coronavirus ribosomal frameshifting signal()
por: Brierley, Ian, et al.
Publicado: (1991)

The influenza A segment 7 mRNA 3′ splice site pseudoknot/hairpin family
por: Moss, Walter N., et al.
Publicado: (2012)

Characterization of an efficient coronavirus ribosomal frameshifting signal: Requirement for an RNA pseudoknot
por: Brierley, Ian, et al.
Publicado: (1989)

Identification of novel ligands for the RNA pseudoknot that regulate −1 ribosomal frameshifting
por: Park, So-Jung, et al.
Publicado: (2008)

Formation of frameshift-stimulating RNA pseudoknots is facilitated by remodeling of their folding intermediates
por: Hsu, Chiung-Fang, et al.
Publicado: (2021)

HIV-1 frameshift efficiency is primarily determined by the stability of base pairs positioned at the mRNA entrance channel of the ribosome
por: Mouzakis, Kathryn D., et al.
Publicado: (2013)

Translocation kinetics and structural dynamics of ribosomes are modulated by the conformational plasticity of downstream pseudoknots
por: Wu, Bo, et al.
Publicado: (2018)

The role of wobble uridine modifications in +1 translational frameshifting in eukaryotes
por: Tükenmez, Hasan, et al.
Publicado: (2015)

An RNA pseudoknot stimulates HTLV-1 pro-pol programmed −1 ribosomal frameshifting
por: Thulson, Eliza, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_v6n95n1ura8jre1butved57k3b