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Energetics of Glucose Metabolism: A Phenomenological Approach to Metabolic Network Modeling

A new formalism to describe metabolic fluxes as well as membrane transport processes was developed. The new flux equations are comparable to other phenomenological laws. Michaelis-Menten like expressions, as well as flux equations of nonequilibrium thermodynamics, can be regarded as special cases of...

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Autor principal: Diederichs, Frank
Formato: Texto
Lenguaje:English
Publicado: Molecular Diversity Preservation International (MDPI) 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2996740/
https://www.ncbi.nlm.nih.gov/pubmed/21152283
http://dx.doi.org/10.3390/ijms11082921
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author Diederichs, Frank
author_facet Diederichs, Frank
author_sort Diederichs, Frank
collection PubMed
description A new formalism to describe metabolic fluxes as well as membrane transport processes was developed. The new flux equations are comparable to other phenomenological laws. Michaelis-Menten like expressions, as well as flux equations of nonequilibrium thermodynamics, can be regarded as special cases of these new equations. For metabolic network modeling, variable conductances and driving forces are required to enable pathway control and to allow a rapid response to perturbations. When applied to oxidative phosphorylation, results of simulations show that whole oxidative phosphorylation cannot be described as a two-flux-system according to nonequilibrium thermodynamics, although all coupled reactions per se fulfill the equations of this theory. Simulations show that activation of ATP-coupled load reactions plus glucose oxidation is brought about by an increase of only two different conductances: a [Ca(2+)] dependent increase of cytosolic load conductances, and an increase of phosphofructokinase conductance by [AMP], which in turn becomes increased through [ADP] generation by those load reactions. In ventricular myocytes, this feedback mechanism is sufficient to increase cellular power output and O(2) consumption several fold, without any appreciable impairment of energetic parameters. Glucose oxidation proceeds near maximal power output, since transformed input and output conductances are nearly equal, yielding an efficiency of about 0.5. This conductance matching is fulfilled also by glucose oxidation of β-cells. But, as a price for the metabolic mechanism of glucose recognition, β-cells have only a limited capability to increase their power output.
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spelling pubmed-29967402010-12-08 Energetics of Glucose Metabolism: A Phenomenological Approach to Metabolic Network Modeling Diederichs, Frank Int J Mol Sci Article A new formalism to describe metabolic fluxes as well as membrane transport processes was developed. The new flux equations are comparable to other phenomenological laws. Michaelis-Menten like expressions, as well as flux equations of nonequilibrium thermodynamics, can be regarded as special cases of these new equations. For metabolic network modeling, variable conductances and driving forces are required to enable pathway control and to allow a rapid response to perturbations. When applied to oxidative phosphorylation, results of simulations show that whole oxidative phosphorylation cannot be described as a two-flux-system according to nonequilibrium thermodynamics, although all coupled reactions per se fulfill the equations of this theory. Simulations show that activation of ATP-coupled load reactions plus glucose oxidation is brought about by an increase of only two different conductances: a [Ca(2+)] dependent increase of cytosolic load conductances, and an increase of phosphofructokinase conductance by [AMP], which in turn becomes increased through [ADP] generation by those load reactions. In ventricular myocytes, this feedback mechanism is sufficient to increase cellular power output and O(2) consumption several fold, without any appreciable impairment of energetic parameters. Glucose oxidation proceeds near maximal power output, since transformed input and output conductances are nearly equal, yielding an efficiency of about 0.5. This conductance matching is fulfilled also by glucose oxidation of β-cells. But, as a price for the metabolic mechanism of glucose recognition, β-cells have only a limited capability to increase their power output. Molecular Diversity Preservation International (MDPI) 2010-08-12 /pmc/articles/PMC2996740/ /pubmed/21152283 http://dx.doi.org/10.3390/ijms11082921 Text en © 2010 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0 This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Article
Diederichs, Frank
Energetics of Glucose Metabolism: A Phenomenological Approach to Metabolic Network Modeling
title Energetics of Glucose Metabolism: A Phenomenological Approach to Metabolic Network Modeling
title_full Energetics of Glucose Metabolism: A Phenomenological Approach to Metabolic Network Modeling
title_fullStr Energetics of Glucose Metabolism: A Phenomenological Approach to Metabolic Network Modeling
title_full_unstemmed Energetics of Glucose Metabolism: A Phenomenological Approach to Metabolic Network Modeling
title_short Energetics of Glucose Metabolism: A Phenomenological Approach to Metabolic Network Modeling
title_sort energetics of glucose metabolism: a phenomenological approach to metabolic network modeling
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2996740/
https://www.ncbi.nlm.nih.gov/pubmed/21152283
http://dx.doi.org/10.3390/ijms11082921
work_keys_str_mv AT diederichsfrank energeticsofglucosemetabolismaphenomenologicalapproachtometabolicnetworkmodeling