Cargando…

Genome-wide conserved consensus transcription factor binding motifs are hyper-methylated

BACKGROUND: DNA methylation can regulate gene expression by modulating the interaction between DNA and proteins or protein complexes. Conserved consensus motifs exist across the human genome ("predicted transcription factor binding sites": "predicted TFBS") but the large majority...

Descripción completa

Detalles Bibliográficos
Autores principales:	Choy, Mun-Kit, Movassagh, Mehregan, Goh, Hock-Guan, Bennett, Martin R, Down, Thomas A, Foo, Roger SY
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2997012/ https://www.ncbi.nlm.nih.gov/pubmed/20875111 http://dx.doi.org/10.1186/1471-2164-11-519

Ejemplares similares

Differential DNA Methylation Correlates with Differential Expression of Angiogenic Factors in Human Heart Failure
por: Movassagh, Mehregan, et al.
Publicado: (2010)

The human variome: genomic and epigenomic diversity
por: Choy, Munkit, et al.
Publicado: (2011)

High-throughput sequencing identifies STAT3 as the DNA-associated factor for p53-NF-κB-complex-dependent gene expression in human heart failure
por: Choy, Mun-Kit, et al.
Publicado: (2010)

The landscape of DNA repeat elements in human heart failure
por: Haider, Syed, et al.
Publicado: (2012)

Cardiac differentiation in Xenopus requires the cyclin-dependent kinase inhibitor, p27Xic1
por: Movassagh, Mehregan, et al.
Publicado: (2008)

iMotifs: an integrated sequence motif visualization and analysis environment
por: Piipari, Matias, et al.
Publicado: (2010)

Controlling for conservation in genome-wide DNA methylation studies
por: Singer, Meromit, et al.
Publicado: (2015)

NestedMICA as an ab initio protein motif discovery tool
por: Doğruel, Mutlu, et al.
Publicado: (2008)

Conserved motif VIII of murine DNA methyltransferase Dnmt3a is essential for methylation activity
por: Lukashevich, Olga V., et al.
Publicado: (2016)

NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence
por: Down, Thomas A., et al.
Publicado: (2005)

Conserved Motifs and Domains in Members of Pospiviroidae
por: Wüsthoff, Kevin-Phil, et al.
Publicado: (2022)

Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster
por: Down, Thomas A, et al.
Publicado: (2007)

DNMTs and Impact of CpG Content, Transcription Factors, Consensus Motifs, lncRNAs, and Histone Marks on DNA Methylation
por: Loaeza-Loaeza, Jaqueline, et al.
Publicado: (2020)

Quantitative and Functional Characterization of the Hyper-Conserved Protein of Prochlorococcus and Marine Synechococcus
por: Whidden, Caroline E., et al.
Publicado: (2014)

The C2H2-ZF transcription factor Zfp335 recognizes two consensus motifs using separate zinc finger arrays
por: Han, Brenda Yuyuan, et al.
Publicado: (2016)

Integrative analysis of tissue-specific methylation and alternative splicing identifies conserved transcription factor binding motifs
por: Wan, Jun, et al.
Publicado: (2013)

WorldWideWeb: proposal for a HyperText Project
por: Berners-Lee, Timothy J, et al.
Publicado: (1990)

Motto: Representing Motifs in Consensus Sequences with Minimum Information Loss
por: Wang, Mengchi, et al.
Publicado: (2020)

Mutation of Conserved Histidines Alters Tertiary Structure and Nanomechanics of Consensus Ankyrin Repeats
por: Lee, Whasil, et al.
Publicado: (2012)

Evolutionary Conserved Motif Finder (ECMFinder) for genome-wide identification of clustered YY1- and CTCF-binding sites
por: Kang, Keunsoo, et al.
Publicado: (2009)

Genome-Wide Identification of Effector Candidates With Conserved Motifs From the Wheat Leaf Rust Fungus Puccinia triticina
por: Zhao, Shuqing, et al.
Publicado: (2020)

Algal MIPs, high diversity and conserved motifs
por: Anderberg, Hanna I, et al.
Publicado: (2011)

Predicting conserved protein motifs with Sub-HMMs
por: Horan, Kevin, et al.
Publicado: (2010)

Identification and analysis of consensus RNA motifs binding to the genome regulator CTCF
por: Kuang, Shuzhen, et al.
Publicado: (2020)

Structural Analysis of microRNAs in Myeloid Cancer Reveals Consensus Motifs
por: Dogan, Senol, et al.
Publicado: (2022)

Methylation Motifs in Promoter Sequences May Contribute to the Maintenance of a Conserved (m5)C Methyltransferase in Helicobacter pylori
por: Meng, Bowen, et al.
Publicado: (2021)

CoSMoS: Conserved Sequence Motif Search in the proteome
por: Liu, Xiao I, et al.
Publicado: (2006)

Improvement of alignment accuracy utilizing sequentially conserved motifs
por: Chakrabarti, Saikat, et al.
Publicado: (2004)

The Significance of EXDD and RXKD Motif Conservation in Rel Proteins
por: Sajish, Mathew, et al.
Publicado: (2009)

Conserved Motifs and Prediction of Regulatory Modules in Caenorhabditis elegans
por: Zhao, Guoyan, et al.
Publicado: (2012)

Systematic identification of conserved motif modules in the human genome
por: Cai, Xiaohui, et al.
Publicado: (2010)

TOPDOM: database of conservatively located domains and motifs in proteins
por: Varga, Julia, et al.
Publicado: (2016)

Genome Analysis of Conserved Dehydrin Motifs in Vascular Plants
por: Malik, Ahmad A., et al.
Publicado: (2017)

Evolutionary conservation of sequence motifs at sites of protein modification
por: Li, Shuang, et al.
Publicado: (2023)

Antibiotic hyper-resistance in a class I aminoacyl-tRNA synthetase with altered active site signature motif
por: Brkic, A., et al.
Publicado: (2023)

QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs
por: Frees, Scott, et al.
Publicado: (2014)

AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses
por: Shi, Jiantao, et al.
Publicado: (2011)

The Consensus 5' Splice Site Motif Inhibits mRNA Nuclear Export
por: Lee, Eliza S., et al.
Publicado: (2015)

MotifMap: integrative genome-wide maps of regulatory motif sites for model species
por: Daily, Kenneth, et al.
Publicado: (2011)

Diabetes and Frailty: An Expert Consensus Statement on the Management of Older Adults with Type 2 Diabetes
por: Strain, W. David, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_r9juchi17agrma0hj1m02l1eb5