Cargando…

Recent advances in clustering methods for protein interaction networks

The increasing availability of large-scale protein-protein interaction data has made it possible to understand the basic components and organization of cell machinery from the network level. The arising challenge is how to analyze such complex interacting data to reveal the principles of cellular or...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Jianxin, Li, Min, Deng, Youping, Pan, Yi
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2999340/ https://www.ncbi.nlm.nih.gov/pubmed/21143777 http://dx.doi.org/10.1186/1471-2164-11-S3-S10

Ejemplares similares

Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks
por: Peng, Wei, et al.
Publicado: (2012)

Identifying protein complexes from interaction networks based on clique percolation and distance restriction
por: Wang, Jianxin, et al.
Publicado: (2010)

Recent advances in coupled-cluster methods
por: Bartlett, Rodney J
Publicado: (1997)

Identification of protein complexes from multi-relationship protein interaction networks
por: Li, Xueyong, et al.
Publicado: (2016)

Exploring virus relationships based on virus-host protein-protein interaction network
por: Xu, Feng, et al.
Publicado: (2011)

Identifying protein complexes based on density and modularity in protein-protein interaction network
por: Ren, Jun, et al.
Publicado: (2013)

Recent Advances in Protein–Protein Interactions
por: Sedov, Igor A., et al.
Publicado: (2023)

Exploring Function Prediction in Protein Interaction Networks via Clustering Methods
por: Trivodaliev, Kire, et al.
Publicado: (2014)

Rechecking the Centrality-Lethality Rule in the Scope of Protein Subcellular Localization Interaction Networks
por: Peng, Xiaoqing, et al.
Publicado: (2015)

Evaluation of clustering algorithms for protein-protein interaction networks
por: Brohée, Sylvain, et al.
Publicado: (2006)

Clustered microRNAs' coordination in regulating protein-protein interaction network
por: Yuan, Xiongying, et al.
Publicado: (2009)

A Seed Expansion Graph Clustering Method for Protein Complexes Detection in Protein Interaction Networks
por: Wang, Jie, et al.
Publicado: (2017)

CytoCluster: A Cytoscape Plugin for Cluster Analysis and Visualization of Biological Networks
por: Li, Min, et al.
Publicado: (2017)

Recent advances in de novo protein design: Principles, methods, and applications
por: Pan, Xingjie, et al.
Publicado: (2021)

Diffusion Model Based Spectral Clustering for Protein-Protein Interaction Networks
por: Inoue, Kentaro, et al.
Publicado: (2010)

An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation
por: Wang, Jianxin, et al.
Publicado: (2013)

Predicting essential proteins based on subcellular localization, orthology and PPI networks
por: Li, Gaoshi, et al.
Publicado: (2016)

Functional clustering of yeast proteins from the protein-protein interaction network
por: Sen, Taner Z, et al.
Publicado: (2006)

Identifying Dynamic Protein Complexes Based on Gene Expression Profiles and PPI Networks
por: Li, Min, et al.
Publicado: (2014)

Interaction site prediction by structural similarity to neighboring clusters in protein-protein interaction networks
por: Monji, Hiroyuki, et al.
Publicado: (2011)

Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data
por: Li, Min, et al.
Publicado: (2012)

Interlog protein network: an evolutionary benchmark of protein interaction networks for the evaluation of clustering algorithms
por: Jafari, Mohieddin, et al.
Publicado: (2015)

Recent Coselection in Human Populations Revealed by Protein–Protein Interaction Network
por: Qian, Wei, et al.
Publicado: (2014)

Inferring topology from clustering coefficients in protein-protein interaction networks
por: Friedel, Caroline C, et al.
Publicado: (2006)

Evidence for the additions of clustered interacting nodes during the evolution of protein interaction networks from network motifs
por: Liu, Zhongyang, et al.
Publicado: (2011)

Grouping multidimensional data: recent advances in clustering
por: Kogan, Jacob, et al.
Publicado: (2005)

Recent advances in hybrid metaheuristics for data clustering
por: De, Sourav, et al.
Publicado: (2020)

Multifunctional proteins revealed by overlapping clustering in protein interaction network
por: Becker, Emmanuelle, et al.
Publicado: (2012)

Identifying Hierarchical and Overlapping Protein Complexes Based on Essential Protein-Protein Interactions and “Seed-Expanding” Method
por: Ren, Jun, et al.
Publicado: (2014)

Cross-species cluster co-conservation: a new method for generating protein interaction networks
por: Karimpour-Fard, Anis, et al.
Publicado: (2007)

Biological network motif detection and evaluation
por: Kim, Wooyoung, et al.
Publicado: (2011)

Analysis of protein-protein interaction network and functional modules on primary osteoporosis
por: Li, Gai-Li, et al.
Publicado: (2014)

ACCBN: ant-Colony-clustering-based bipartite network method for predicting long non-coding RNA–protein interactions
por: Zhu, Rong, et al.
Publicado: (2019)

Network Cluster Analysis of Protein–Protein Interaction Network–Identified Biomarker for Type 2 Diabetes
por: Li, Zhonghui, et al.
Publicado: (2015)

Detecting Overlapping Protein Complexes by Rough-Fuzzy Clustering in Protein-Protein Interaction Networks
por: Wu, Hao, et al.
Publicado: (2014)

Recent Advances in Silent Gene Cluster Activation in Streptomyces
por: Liu, Zhenyu, et al.
Publicado: (2021)

Classification, clustering, and data analysis: recent advances and applications
por: Jajuga, Krzysztof, et al.
Publicado: (2002)

Subject clustering by IF-PCA and several recent methods
por: Chen, Dieyi, et al.
Publicado: (2023)

Recent advances in the development of protein–protein interactions modulators: mechanisms and clinical trials
por: Lu, Haiying, et al.
Publicado: (2020)

Recent Advances in Communications and Networking
por: Zhou, Zhongmei, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_e216db6o01bppi6ktfbq5vt0qo