Cargando…

Towards a Global Barcode Library for Lymantria (Lepidoptera: Lymantriinae) Tussock Moths of Biosecurity Concern

BACKGROUND: Detecting and controlling the movements of invasive species, such as insect pests, relies upon rapid and accurate species identification in order to initiate containment procedures by the appropriate authorities. Many species in the tussock moth genus Lymantria are significant forestry p...

Descripción completa

Detalles Bibliográficos
Autores principales: deWaard, Jeremy R., Mitchell, Andrew, Keena, Melody A., Gopurenko, David, Boykin, Laura M., Armstrong, Karen F., Pogue, Michael G., Lima, Joao, Floyd, Robin, Hanner, Robert H., Humble, Leland M.
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3000334/
https://www.ncbi.nlm.nih.gov/pubmed/21151562
http://dx.doi.org/10.1371/journal.pone.0014280
_version_ 1782193524793409536
author deWaard, Jeremy R.
Mitchell, Andrew
Keena, Melody A.
Gopurenko, David
Boykin, Laura M.
Armstrong, Karen F.
Pogue, Michael G.
Lima, Joao
Floyd, Robin
Hanner, Robert H.
Humble, Leland M.
author_facet deWaard, Jeremy R.
Mitchell, Andrew
Keena, Melody A.
Gopurenko, David
Boykin, Laura M.
Armstrong, Karen F.
Pogue, Michael G.
Lima, Joao
Floyd, Robin
Hanner, Robert H.
Humble, Leland M.
author_sort deWaard, Jeremy R.
collection PubMed
description BACKGROUND: Detecting and controlling the movements of invasive species, such as insect pests, relies upon rapid and accurate species identification in order to initiate containment procedures by the appropriate authorities. Many species in the tussock moth genus Lymantria are significant forestry pests, including the gypsy moth Lymantria dispar L., and consequently have been a focus for the development of molecular diagnostic tools to assist in identifying species and source populations. In this study we expand the taxonomic and geographic coverage of the DNA barcode reference library, and further test the utility of this diagnostic method, both for species/subspecies assignment and for determination of geographic provenance of populations. METHODOLOGY/PRINCIPAL FINDINGS: Cytochrome oxidase I (COI) barcodes were obtained from 518 individuals and 36 species of Lymantria, including sequences assembled and generated from previous studies, vouchered material in public collections, and intercepted specimens obtained from surveillance programs in Canada. A maximum likelihood tree was constructed, revealing high bootstrap support for 90% of species clusters. Bayesian species assignment was also tested, and resulted in correct assignment to species and subspecies in all instances. The performance of barcoding was also compared against the commonly employed NB restriction digest system (also based on COI); while the latter is informative for discriminating gypsy moth subspecies, COI barcode sequences provide greater resolution and generality by encompassing a greater number of haplotypes across all Lymantria species, none shared between species. CONCLUSIONS/SIGNIFICANCE: This study demonstrates the efficacy of DNA barcodes for diagnosing species of Lymantria and reinforces the view that the approach is an under-utilized resource with substantial potential for biosecurity and surveillance. Biomonitoring agencies currently employing the NB restriction digest system would gather more information by transitioning to the use of DNA barcoding, a change which could be made relatively seamlessly as the same gene region underlies both protocols.
format Text
id pubmed-3000334
institution National Center for Biotechnology Information
language English
publishDate 2010
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-30003342010-12-13 Towards a Global Barcode Library for Lymantria (Lepidoptera: Lymantriinae) Tussock Moths of Biosecurity Concern deWaard, Jeremy R. Mitchell, Andrew Keena, Melody A. Gopurenko, David Boykin, Laura M. Armstrong, Karen F. Pogue, Michael G. Lima, Joao Floyd, Robin Hanner, Robert H. Humble, Leland M. PLoS One Research Article BACKGROUND: Detecting and controlling the movements of invasive species, such as insect pests, relies upon rapid and accurate species identification in order to initiate containment procedures by the appropriate authorities. Many species in the tussock moth genus Lymantria are significant forestry pests, including the gypsy moth Lymantria dispar L., and consequently have been a focus for the development of molecular diagnostic tools to assist in identifying species and source populations. In this study we expand the taxonomic and geographic coverage of the DNA barcode reference library, and further test the utility of this diagnostic method, both for species/subspecies assignment and for determination of geographic provenance of populations. METHODOLOGY/PRINCIPAL FINDINGS: Cytochrome oxidase I (COI) barcodes were obtained from 518 individuals and 36 species of Lymantria, including sequences assembled and generated from previous studies, vouchered material in public collections, and intercepted specimens obtained from surveillance programs in Canada. A maximum likelihood tree was constructed, revealing high bootstrap support for 90% of species clusters. Bayesian species assignment was also tested, and resulted in correct assignment to species and subspecies in all instances. The performance of barcoding was also compared against the commonly employed NB restriction digest system (also based on COI); while the latter is informative for discriminating gypsy moth subspecies, COI barcode sequences provide greater resolution and generality by encompassing a greater number of haplotypes across all Lymantria species, none shared between species. CONCLUSIONS/SIGNIFICANCE: This study demonstrates the efficacy of DNA barcodes for diagnosing species of Lymantria and reinforces the view that the approach is an under-utilized resource with substantial potential for biosecurity and surveillance. Biomonitoring agencies currently employing the NB restriction digest system would gather more information by transitioning to the use of DNA barcoding, a change which could be made relatively seamlessly as the same gene region underlies both protocols. Public Library of Science 2010-12-09 /pmc/articles/PMC3000334/ /pubmed/21151562 http://dx.doi.org/10.1371/journal.pone.0014280 Text en This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. https://creativecommons.org/publicdomain/zero/1.0/ This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration, which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.
spellingShingle Research Article
deWaard, Jeremy R.
Mitchell, Andrew
Keena, Melody A.
Gopurenko, David
Boykin, Laura M.
Armstrong, Karen F.
Pogue, Michael G.
Lima, Joao
Floyd, Robin
Hanner, Robert H.
Humble, Leland M.
Towards a Global Barcode Library for Lymantria (Lepidoptera: Lymantriinae) Tussock Moths of Biosecurity Concern
title Towards a Global Barcode Library for Lymantria (Lepidoptera: Lymantriinae) Tussock Moths of Biosecurity Concern
title_full Towards a Global Barcode Library for Lymantria (Lepidoptera: Lymantriinae) Tussock Moths of Biosecurity Concern
title_fullStr Towards a Global Barcode Library for Lymantria (Lepidoptera: Lymantriinae) Tussock Moths of Biosecurity Concern
title_full_unstemmed Towards a Global Barcode Library for Lymantria (Lepidoptera: Lymantriinae) Tussock Moths of Biosecurity Concern
title_short Towards a Global Barcode Library for Lymantria (Lepidoptera: Lymantriinae) Tussock Moths of Biosecurity Concern
title_sort towards a global barcode library for lymantria (lepidoptera: lymantriinae) tussock moths of biosecurity concern
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3000334/
https://www.ncbi.nlm.nih.gov/pubmed/21151562
http://dx.doi.org/10.1371/journal.pone.0014280
work_keys_str_mv AT dewaardjeremyr towardsaglobalbarcodelibraryforlymantrialepidopteralymantriinaetussockmothsofbiosecurityconcern
AT mitchellandrew towardsaglobalbarcodelibraryforlymantrialepidopteralymantriinaetussockmothsofbiosecurityconcern
AT keenamelodya towardsaglobalbarcodelibraryforlymantrialepidopteralymantriinaetussockmothsofbiosecurityconcern
AT gopurenkodavid towardsaglobalbarcodelibraryforlymantrialepidopteralymantriinaetussockmothsofbiosecurityconcern
AT boykinlauram towardsaglobalbarcodelibraryforlymantrialepidopteralymantriinaetussockmothsofbiosecurityconcern
AT armstrongkarenf towardsaglobalbarcodelibraryforlymantrialepidopteralymantriinaetussockmothsofbiosecurityconcern
AT poguemichaelg towardsaglobalbarcodelibraryforlymantrialepidopteralymantriinaetussockmothsofbiosecurityconcern
AT limajoao towardsaglobalbarcodelibraryforlymantrialepidopteralymantriinaetussockmothsofbiosecurityconcern
AT floydrobin towardsaglobalbarcodelibraryforlymantrialepidopteralymantriinaetussockmothsofbiosecurityconcern
AT hannerroberth towardsaglobalbarcodelibraryforlymantrialepidopteralymantriinaetussockmothsofbiosecurityconcern
AT humblelelandm towardsaglobalbarcodelibraryforlymantrialepidopteralymantriinaetussockmothsofbiosecurityconcern