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Eco-evolutionary dynamics, coding structure and the information threshold

BACKGROUND: The amount of information that can be maintained in an evolutionary system of replicators is limited by genome length, the number of errors during replication (mutation rate) and various external factors that influence the selection pressure. To date, this phenomenon, known as the inform...

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Autores principales: de Boer, Folkert K, Hogeweg, Paulien
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001725/
https://www.ncbi.nlm.nih.gov/pubmed/21106077
http://dx.doi.org/10.1186/1471-2148-10-361
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author de Boer, Folkert K
Hogeweg, Paulien
author_facet de Boer, Folkert K
Hogeweg, Paulien
author_sort de Boer, Folkert K
collection PubMed
description BACKGROUND: The amount of information that can be maintained in an evolutionary system of replicators is limited by genome length, the number of errors during replication (mutation rate) and various external factors that influence the selection pressure. To date, this phenomenon, known as the information threshold, has been studied (both genotypically and phenotypically) in a constant environment and with respect to maintenance (as opposed to accumulation) of information. Here we take a broader perspective on this problem by studying the accumulation of information in an ecosystem, given an evolvable coding structure. Moreover, our setup allows for individual based as well as ecosystem based solutions. That is, all functions can be performed by individual replicators, or complementing functions can be performed by different replicators. In this setup, where both the ecosystem and the individual genomes can evolve their structure, we study how populations cope with high mutation rates and accordingly how the information threshold might be alleviated. RESULTS: We observe that the first response to increased mutation rates is a change in coding structure. At moderate mutation rates evolution leads to longer genomes with a higher diversity than at high mutation rates. Thus, counter-intuitively, at higher mutation rates diversity is reduced and the efficacy of the evolutionary process is decreased. Therefore, moderate mutation rates allow for more degrees of freedom in exploring genotype space during the evolutionary trajectory, facilitating the emergence of solutions. When an individual based solution cannot be attained due to high mutation rates, spatial structuring of the ecosystem can accommodate the evolution of ecosystem based solutions. CONCLUSIONS: We conclude that the evolutionary freedom (eg. the number of genotypes that can be reached by evolution) is increasingly restricted by higher mutation rates. In the case of such severe mutation rates that an individual based solution cannot be evolved, the ecosystem can take over and still process the required information forming ecosystem based solutions. We provide a proof of principle for species fulfilling the different roles in an ecosystem when single replicators can no longer cope with all functions simultaneously. This could be a first step in crossing the information threshold.
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spelling pubmed-30017252010-12-15 Eco-evolutionary dynamics, coding structure and the information threshold de Boer, Folkert K Hogeweg, Paulien BMC Evol Biol Research Article BACKGROUND: The amount of information that can be maintained in an evolutionary system of replicators is limited by genome length, the number of errors during replication (mutation rate) and various external factors that influence the selection pressure. To date, this phenomenon, known as the information threshold, has been studied (both genotypically and phenotypically) in a constant environment and with respect to maintenance (as opposed to accumulation) of information. Here we take a broader perspective on this problem by studying the accumulation of information in an ecosystem, given an evolvable coding structure. Moreover, our setup allows for individual based as well as ecosystem based solutions. That is, all functions can be performed by individual replicators, or complementing functions can be performed by different replicators. In this setup, where both the ecosystem and the individual genomes can evolve their structure, we study how populations cope with high mutation rates and accordingly how the information threshold might be alleviated. RESULTS: We observe that the first response to increased mutation rates is a change in coding structure. At moderate mutation rates evolution leads to longer genomes with a higher diversity than at high mutation rates. Thus, counter-intuitively, at higher mutation rates diversity is reduced and the efficacy of the evolutionary process is decreased. Therefore, moderate mutation rates allow for more degrees of freedom in exploring genotype space during the evolutionary trajectory, facilitating the emergence of solutions. When an individual based solution cannot be attained due to high mutation rates, spatial structuring of the ecosystem can accommodate the evolution of ecosystem based solutions. CONCLUSIONS: We conclude that the evolutionary freedom (eg. the number of genotypes that can be reached by evolution) is increasingly restricted by higher mutation rates. In the case of such severe mutation rates that an individual based solution cannot be evolved, the ecosystem can take over and still process the required information forming ecosystem based solutions. We provide a proof of principle for species fulfilling the different roles in an ecosystem when single replicators can no longer cope with all functions simultaneously. This could be a first step in crossing the information threshold. BioMed Central 2010-11-24 /pmc/articles/PMC3001725/ /pubmed/21106077 http://dx.doi.org/10.1186/1471-2148-10-361 Text en Copyright ©2010 de Boer and Hogeweg; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
de Boer, Folkert K
Hogeweg, Paulien
Eco-evolutionary dynamics, coding structure and the information threshold
title Eco-evolutionary dynamics, coding structure and the information threshold
title_full Eco-evolutionary dynamics, coding structure and the information threshold
title_fullStr Eco-evolutionary dynamics, coding structure and the information threshold
title_full_unstemmed Eco-evolutionary dynamics, coding structure and the information threshold
title_short Eco-evolutionary dynamics, coding structure and the information threshold
title_sort eco-evolutionary dynamics, coding structure and the information threshold
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001725/
https://www.ncbi.nlm.nih.gov/pubmed/21106077
http://dx.doi.org/10.1186/1471-2148-10-361
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