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Kinetics of Rhodopsin Deactivation and Its Role in Regulating Recovery and Reproducibility of Rod Photoresponse

The single photon response (SPR) in vertebrate phototransduction is regulated by the dynamics of R(*) during its lifetime, including the random number of phosphorylations, the catalytic activity and the random sojourn time at each phosphorylation level. Because of this randomness the electrical resp...

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Autores principales: Caruso, Giovanni, Bisegna, Paolo, Lenoci, Leonardo, Andreucci, Daniele, Gurevich, Vsevolod V., Hamm, Heidi E., DiBenedetto, Emmanuele
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3002991/
https://www.ncbi.nlm.nih.gov/pubmed/21200415
http://dx.doi.org/10.1371/journal.pcbi.1001031
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author Caruso, Giovanni
Bisegna, Paolo
Lenoci, Leonardo
Andreucci, Daniele
Gurevich, Vsevolod V.
Hamm, Heidi E.
DiBenedetto, Emmanuele
author_facet Caruso, Giovanni
Bisegna, Paolo
Lenoci, Leonardo
Andreucci, Daniele
Gurevich, Vsevolod V.
Hamm, Heidi E.
DiBenedetto, Emmanuele
author_sort Caruso, Giovanni
collection PubMed
description The single photon response (SPR) in vertebrate phototransduction is regulated by the dynamics of R(*) during its lifetime, including the random number of phosphorylations, the catalytic activity and the random sojourn time at each phosphorylation level. Because of this randomness the electrical responses are expected to be inherently variable. However the SPR is highly reproducible. The mechanisms that confer to the SPR such a low variability are not completely understood. The kinetics of rhodopsin deactivation is investigated by a Continuous Time Markov Chain (CTMC) based on the biochemistry of rhodopsin activation and deactivation, interfaced with a spatio-temporal model of phototransduction. The model parameters are extracted from the photoresponse data of both wild type and mutant mice, having variable numbers of phosphorylation sites and, with the same set of parameters, the model reproduces both WT and mutant responses. The sources of variability are dissected into its components, by asking whether a random number of turnoff steps, a random sojourn time between steps, or both, give rise to the known variability. The model shows that only the randomness of the sojourn times in each of the phosphorylated states contributes to the Coefficient of Variation (CV) of the response, whereas the randomness of the number of R(*) turnoff steps has a negligible effect. These results counter the view that the larger the number of decay steps of R(*), the more stable the photoresponse is. Our results indicate that R(*) shutoff is responsible for the variability of the photoresponse, while the diffusion of the second messengers acts as a variability suppressor.
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spelling pubmed-30029912011-01-03 Kinetics of Rhodopsin Deactivation and Its Role in Regulating Recovery and Reproducibility of Rod Photoresponse Caruso, Giovanni Bisegna, Paolo Lenoci, Leonardo Andreucci, Daniele Gurevich, Vsevolod V. Hamm, Heidi E. DiBenedetto, Emmanuele PLoS Comput Biol Research Article The single photon response (SPR) in vertebrate phototransduction is regulated by the dynamics of R(*) during its lifetime, including the random number of phosphorylations, the catalytic activity and the random sojourn time at each phosphorylation level. Because of this randomness the electrical responses are expected to be inherently variable. However the SPR is highly reproducible. The mechanisms that confer to the SPR such a low variability are not completely understood. The kinetics of rhodopsin deactivation is investigated by a Continuous Time Markov Chain (CTMC) based on the biochemistry of rhodopsin activation and deactivation, interfaced with a spatio-temporal model of phototransduction. The model parameters are extracted from the photoresponse data of both wild type and mutant mice, having variable numbers of phosphorylation sites and, with the same set of parameters, the model reproduces both WT and mutant responses. The sources of variability are dissected into its components, by asking whether a random number of turnoff steps, a random sojourn time between steps, or both, give rise to the known variability. The model shows that only the randomness of the sojourn times in each of the phosphorylated states contributes to the Coefficient of Variation (CV) of the response, whereas the randomness of the number of R(*) turnoff steps has a negligible effect. These results counter the view that the larger the number of decay steps of R(*), the more stable the photoresponse is. Our results indicate that R(*) shutoff is responsible for the variability of the photoresponse, while the diffusion of the second messengers acts as a variability suppressor. Public Library of Science 2010-12-16 /pmc/articles/PMC3002991/ /pubmed/21200415 http://dx.doi.org/10.1371/journal.pcbi.1001031 Text en Caruso et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Caruso, Giovanni
Bisegna, Paolo
Lenoci, Leonardo
Andreucci, Daniele
Gurevich, Vsevolod V.
Hamm, Heidi E.
DiBenedetto, Emmanuele
Kinetics of Rhodopsin Deactivation and Its Role in Regulating Recovery and Reproducibility of Rod Photoresponse
title Kinetics of Rhodopsin Deactivation and Its Role in Regulating Recovery and Reproducibility of Rod Photoresponse
title_full Kinetics of Rhodopsin Deactivation and Its Role in Regulating Recovery and Reproducibility of Rod Photoresponse
title_fullStr Kinetics of Rhodopsin Deactivation and Its Role in Regulating Recovery and Reproducibility of Rod Photoresponse
title_full_unstemmed Kinetics of Rhodopsin Deactivation and Its Role in Regulating Recovery and Reproducibility of Rod Photoresponse
title_short Kinetics of Rhodopsin Deactivation and Its Role in Regulating Recovery and Reproducibility of Rod Photoresponse
title_sort kinetics of rhodopsin deactivation and its role in regulating recovery and reproducibility of rod photoresponse
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3002991/
https://www.ncbi.nlm.nih.gov/pubmed/21200415
http://dx.doi.org/10.1371/journal.pcbi.1001031
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