Cargando…

Reconstructed Ancestral Sequences Improve Pathogen Identification Using Resequencing DNA Microarrays

We describe the benefit of using reconstructed ancestral sequences (RAS) on resequencing microarrays for rapid pathogen identification, with Enterobacteriaceae rpoB sequences as a model. Our results demonstrate a sharp improvement of call rate and accuracy when using RASs as compared to extant seque...

Descripción completa

Detalles Bibliográficos
Autores principales:	Berthet, Nicolas, Deletoile, Alexis, Passet, Virginie, Kennedy, Giulia C., Manuguerra, Jean-Claude, Cole, Stewart T., Brisse, Sylvain
Formato:	Texto
Lenguaje:	English
Publicado:	Public Library of Science 2010
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3004854/ https://www.ncbi.nlm.nih.gov/pubmed/21187950 http://dx.doi.org/10.1371/journal.pone.0015243

Ejemplares similares

Use of consensus sequences for the design of high density resequencing microarrays: the influenza virus paradigm
por: Leclercq, India, et al.
Publicado: (2010)

Application of High-Density DNA Resequencing Microarray for Detection and Characterization of Botulinum Neurotoxin-Producing Clostridia
por: Vanhomwegen, Jessica, et al.
Publicado: (2013)

Resequencing Microarray Technology for Genotyping Human Papillomavirus in Cervical Smears
por: Berthet, Nicolas, et al.
Publicado: (2014)

The Population Structure of Acinetobacter baumannii: Expanding Multiresistant Clones from an Ancestral Susceptible Genetic Pool
por: Diancourt, Laure, et al.
Publicado: (2010)

PCR-Based Identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the Agent of Rhinoscleroma
por: Fevre, Cindy, et al.
Publicado: (2011)

Massively parallel pathogen identification using high‐density microarrays
por: Berthet, Nicolas, et al.
Publicado: (2008)

Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and Related Phylogroups by MALDI-TOF Mass Spectrometry
por: Rodrigues, Carla, et al.
Publicado: (2018)

Genotyping of Bacillus cereus Strains by Microarray-Based Resequencing
por: Zwick, Michael E., et al.
Publicado: (2008)

Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis
por: Breurec, Sebastien, et al.
Publicado: (2016)

Identifying Influenza Viruses with Resequencing Microarrays
por: Wang, Zheng, et al.
Publicado: (2006)

A model of base-call resolution on broad-spectrum pathogen detection resequencing DNA microarrays
por: Malanoski, Anthony P., et al.
Publicado: (2008)

Association of targeted multiplex PCR with resequencing microarray for the detection of multiple respiratory pathogens
por: Shen, Hongwei, et al.
Publicado: (2015)

Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147
por: Rodrigues, Carla, et al.
Publicado: (2022)

Revisiting the genetic diversity of emerging hantaviruses circulating in Europe using a pan-viral resequencing microarray
por: Filippone, Claudia, et al.
Publicado: (2019)

Targeted resequencing of HIV variants by microarray thermodynamics
por: Hadiwikarta, Wahyu W., et al.
Publicado: (2013)

Automated identification of multiple micro-organisms from resequencing DNA microarrays
por: Malanoski, Anthony P., et al.
Publicado: (2006)

Microarray-based resequencing of multiple Bacillus anthracis isolates
por: Zwick, Michael E, et al.
Publicado: (2005)

Resequencing microarray for detection of human adenoviruses in patients with conjunctivitis
por: Woo, Patrick C.Y., et al.
Publicado: (2010)

Tracking ebolavirus genomic drift with a resequencing microarray
por: Tiper, Irina, et al.
Publicado: (2022)

Ancestral Reconstruction
por: Joy, Jeffrey B., et al.
Publicado: (2016)

Community-acquired infection caused by the uncommon hypervirulent Klebsiella pneumoniae ST66-K2 lineage
por: Rodrigues, Carla, et al.
Publicado: (2020)

Liver Abscess Caused by Infection with Community-Acquired Klebsiella quasipneumoniae subsp. quasipneumoniae
por: Breurec, Sebastien, et al.
Publicado: (2016)

The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples
por: Barbier, Elodie, et al.
Publicado: (2020)

Multidrug-resistant Corynebacterium diphtheriae in people with travel history from West Africa to France, March to September 2023
por: Brémont, Sylvie, et al.
Publicado: (2023)

Correction: Tracking ebolavirus genomic drift with a resequencing microarray
por: Tiper, Irina, et al.
Publicado: (2023)

Virulent Clones of Klebsiella pneumoniae: Identification and Evolutionary Scenario Based on Genomic and Phenotypic Characterization
por: Brisse, Sylvain, et al.
Publicado: (2009)

Draft Genome Sequence of Campylobacter coli Strain IPSID-1 Isolated from a Patient with Immunoproliferative Small Intestinal Disease
por: Criscuolo, Alexis, et al.
Publicado: (2014)

Resequencing Arrays for Diagnostics of Respiratory Pathogens
por: Lin, Baochuan, et al.
Publicado: (2009)

Population-based resequencing revealed an ancestral winter group of cultivated flax: implication for flax domestication processes
por: Fu, Yong-Bi
Publicado: (2012)

Community-acquired meningitis caused by a CG86 hypervirulent Klebsiella pneumoniae strain: first case report in the Caribbean
por: Melot, Bénédicte, et al.
Publicado: (2016)

Phages against Noncapsulated Klebsiella pneumoniae: Broader Host range, Slower Resistance
por: Lourenço, Marta, et al.
Publicado: (2023)

High Throughput Genetic Analysis of Congenital Myasthenic Syndromes Using Resequencing Microarrays
por: Denning, Lisa, et al.
Publicado: (2007)

A resequencing pathogen microarray method for high-throughput molecular diagnosis of multiple etiologies associated with central nervous system infection
por: Wang, Ji, et al.
Publicado: (2017)

Recurrent Breast Abscesses due to Corynebacterium kroppenstedtii, a Human Pathogen Uncommon in Caucasian Women
por: Le Flèche-Matéos, Anne, et al.
Publicado: (2012)

Algorithms of Ancestral Gene Length Reconstruction
por: Bolshoy, Alexander, et al.
Publicado: (2013)

REGEN: Ancestral Genome Reconstruction for Bacteria
por: Yang, Kuan, et al.
Publicado: (2012)

Resolution effects in reconstructing ancestral genomes
por: Zheng, Chunfang, et al.
Publicado: (2018)

Ancestral reconstruction of protein interaction networks
por: Liebeskind, Benjamin J., et al.
Publicado: (2019)

Resequencing microarray probe design for typing genetically diverse viruses: human rhinoviruses and enteroviruses
por: Wang, Zheng, et al.
Publicado: (2008)

Comparisons of substitution, insertion and deletion probes for resequencing and mutational analysis using oligonucleotide microarrays
por: Karaman, Mazen W., et al.
Publicado: (2005)

Cannot write session to /tmp/vufind_sessions/sess_3ca7l3j7b1jkrsrlmvkidj2jdi