Cargando…

SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction

BACKGOUND: The identification of B-cell epitopes on antigens has been a subject of intense research as the knowledge of these markers has great implications for the development of peptide-based diagnostics, therapeutics and vaccines. As experimental approaches are often laborious and time consuming,...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wee, Lawrence JK, Simarmata, Diane, Kam, Yiu-Wing, Ng, Lisa FP, Tong, Joo Chuan
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3005920/ https://www.ncbi.nlm.nih.gov/pubmed/21143805 http://dx.doi.org/10.1186/1471-2164-11-S4-S21

Ejemplares similares

SVM-based prediction of caspase substrate cleavage sites
por: Wee, Lawrence JK, et al.
Publicado: (2006)

In silico prediction of the granzyme B degradome
por: Wee, Lawrence JK, et al.
Publicado: (2011)

A multi-factor model for caspase degradome prediction
por: Wee, Lawrence JK, et al.
Publicado: (2009)

SVM clustering
por: Winters-Hilt, Stephen, et al.
Publicado: (2007)

Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM
por: Achawanantakun, Rujira, et al.
Publicado: (2013)

TAP Hunter: a SVM-based system for predicting TAP ligands using local description of amino acid sequence
por: Lam, Tze Hau, et al.
Publicado: (2010)

Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6- associated Pemphigus vulgaris
por: Tong, Joo Chuan, et al.
Publicado: (2006)

Unique Epitopes Recognized by Antibodies Induced in Chikungunya Virus-Infected Non-Human Primates: Implications for the Study of Immunopathology and Vaccine Development
por: Kam, Yiu-Wing, et al.
Publicado: (2014)

Early neutralizing IgG response to Chikungunya virus in infected patients targets a dominant linear epitope on the E2 glycoprotein
por: Kam, Yiu-Wing, et al.
Publicado: (2012)

Gene prediction in metagenomic fragments based on the SVM algorithm
por: Liu, Yongchu, et al.
Publicado: (2013)

Hybrid MM/SVM structural sensors for stochastic sequential data
por: Roux, Brian, et al.
Publicado: (2008)

Splice site identification using probabilistic parameters and SVM classification
por: Baten, AKMA, et al.
Publicado: (2006)

Improving the Performance of SVM-RFE to Select Genes in Microarray Data
por: Ding, Yuanyuan, et al.
Publicado: (2006)

Prediction of protein-protein interactions between viruses and human by an SVM model
por: Cui, Guangyu, et al.
Publicado: (2012)

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition
por: Melvin, Iain, et al.
Publicado: (2007)

A semi-supervised boosting SVM for predicting hot spots at protein-protein Interfaces
por: Xu, Bin, et al.
Publicado: (2012)

Novel differential linear B‐cell epitopes to identify Zika and dengue virus infections in patients
por: Amrun, Siti Naqiah, et al.
Publicado: (2019)

Novel differential linear B‐cell epitopes to identify Zika and dengue virus infections in patients
por: Amrun, Siti Naqiah, et al.
Publicado: (2020)

Comparison of data-merging methods with SVM attribute selection and classification in breast cancer gene expression
por: Bevilacqua, Vitoantonio, et al.
Publicado: (2012)

Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus
por: Khan, Asif M, et al.
Publicado: (2006)

Detection of associations with rare and common SNPs for quantitative traits: a nonparametric Bayes-based approach
por: Ding, Lili, et al.
Publicado: (2011)

MicroRNA identification using linear dimensionality reduction with explicit feature mapping
por: Shakiba, Navid, et al.
Publicado: (2013)

PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors
por: Ahmed, Firoz, et al.
Publicado: (2013)

BayesHammer: Bayesian clustering for error correction in single-cell sequencing
por: Nikolenko, Sergey I, et al.
Publicado: (2013)

HLA Class I Restriction as a Possible Driving Force for Chikungunya Evolution
por: Tong, Joo Chuan, et al.
Publicado: (2010)

Comparison of multipoint linkage analyses for quantitative traits in the CEPH data: parametric LOD scores, variance components LOD scores, and Bayes factors
por: Sung, Yun Ju, et al.
Publicado: (2007)

Genome-wide association analysis of GAW17 data using an empirical Bayes variable selection
por: Pungpapong, Vitara, et al.
Publicado: (2011)

Early Appearance of Neutralizing Immunoglobulin G3 Antibodies Is Associated With Chikungunya Virus Clearance and Long-term Clinical Protection
por: Kam, Yiu-Wing, et al.
Publicado: (2012)

Proceedings of Tri-State Dental Meeting, Held at Put-in-Bay, June 21, 22 and 28, 1898
Publicado: (1898)

In silico identification of common epitopes from pathogenic mycobacteria
por: de la Caridad Addine Ramírez, Bárbara, et al.
Publicado: (2013)

B-cell epitope prediction through a graph model
por: Zhao, Liang, et al.
Publicado: (2012)

SNP and gene networks construction and analysis from classification of copy number variations data
por: Liu, Yang, et al.
Publicado: (2011)

SVM-RFE: selection and visualization of the most relevant features through non-linear kernels
por: Sanz, Hector, et al.
Publicado: (2018)

Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage
por: Choo, Khar Heng, et al.
Publicado: (2008)

Prediction of B-cell epitopes using evolutionary information and propensity scales
por: Lin, Scott Yi-Heng, et al.
Publicado: (2013)

Linearization of ancestral multichromosomal genomes
por: Maňuch, Ján, et al.
Publicado: (2012)

Local structural alignment of RNA with affine gap model
por: King-Fung Wong, Thomas, et al.
Publicado: (2011)

Comprehensive Linear Epitope Prediction System for Host Specificity in Nodaviridae
por: Shih, Tao-Chuan, et al.
Publicado: (2022)

Sorting permutations by cut-circularize-linearize-and-paste operations
por: Huang, Keng-Hsuan, et al.
Publicado: (2011)

SVM-RFE Based Feature Selection and Taguchi Parameters Optimization for Multiclass SVM Classifier
por: Huang, Mei-Ling, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_02vncik5qnka14njc682b59rhq