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Construction of a genetic AND gate under a new standard for assembly of genetic parts

BACKGROUND: Appropriate regulation of respective gene expressions is a bottleneck for the realization of artificial biological systems inside living cells. The modification of several promoter sequences is required to achieve appropriate regulation of the systems. However, a time-consuming process i...

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Autores principales: Ayukawa, Shotaro, Kobayashi, Akio, Nakashima, Yusaku, Takagi, Hidemasa, Hamada, Shogo, Uchiyama, Masahiko, Yugi, Katsuyuki, Murata, Satoshi, Sakakibara, Yasubumi, Hagiya, Masami, Yamamura, Masayuki, Kiga, Daisuke
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3005925/
https://www.ncbi.nlm.nih.gov/pubmed/21143799
http://dx.doi.org/10.1186/1471-2164-11-S4-S16
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author Ayukawa, Shotaro
Kobayashi, Akio
Nakashima, Yusaku
Takagi, Hidemasa
Hamada, Shogo
Uchiyama, Masahiko
Yugi, Katsuyuki
Murata, Satoshi
Sakakibara, Yasubumi
Hagiya, Masami
Yamamura, Masayuki
Kiga, Daisuke
author_facet Ayukawa, Shotaro
Kobayashi, Akio
Nakashima, Yusaku
Takagi, Hidemasa
Hamada, Shogo
Uchiyama, Masahiko
Yugi, Katsuyuki
Murata, Satoshi
Sakakibara, Yasubumi
Hagiya, Masami
Yamamura, Masayuki
Kiga, Daisuke
author_sort Ayukawa, Shotaro
collection PubMed
description BACKGROUND: Appropriate regulation of respective gene expressions is a bottleneck for the realization of artificial biological systems inside living cells. The modification of several promoter sequences is required to achieve appropriate regulation of the systems. However, a time-consuming process is required for the insertion of an operator, a binding site of a protein for gene expression, to the gene regulatory region of a plasmid. Thus, a standardized method for integrating operator sequences to the regulatory region of a plasmid is required. RESULTS: We developed a standardized method for integrating operator sequences to the regulatory region of a plasmid and constructed a synthetic promoter that functions as a genetic AND gate. By standardizing the regulatory region of a plasmid and the operator parts, we established a platform for modular assembly of the operator parts. Moreover, by assembling two different operator parts on the regulatory region, we constructed a regulatory device with an AND gate function. CONCLUSIONS: We implemented a new standard to assemble operator parts for construction of functional genetic logic gates. The logic gates at the molecular scale have important implications for reprogramming cellular behavior.
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spelling pubmed-30059252010-12-22 Construction of a genetic AND gate under a new standard for assembly of genetic parts Ayukawa, Shotaro Kobayashi, Akio Nakashima, Yusaku Takagi, Hidemasa Hamada, Shogo Uchiyama, Masahiko Yugi, Katsuyuki Murata, Satoshi Sakakibara, Yasubumi Hagiya, Masami Yamamura, Masayuki Kiga, Daisuke BMC Genomics Proceedings BACKGROUND: Appropriate regulation of respective gene expressions is a bottleneck for the realization of artificial biological systems inside living cells. The modification of several promoter sequences is required to achieve appropriate regulation of the systems. However, a time-consuming process is required for the insertion of an operator, a binding site of a protein for gene expression, to the gene regulatory region of a plasmid. Thus, a standardized method for integrating operator sequences to the regulatory region of a plasmid is required. RESULTS: We developed a standardized method for integrating operator sequences to the regulatory region of a plasmid and constructed a synthetic promoter that functions as a genetic AND gate. By standardizing the regulatory region of a plasmid and the operator parts, we established a platform for modular assembly of the operator parts. Moreover, by assembling two different operator parts on the regulatory region, we constructed a regulatory device with an AND gate function. CONCLUSIONS: We implemented a new standard to assemble operator parts for construction of functional genetic logic gates. The logic gates at the molecular scale have important implications for reprogramming cellular behavior. BioMed Central 2010-12-02 /pmc/articles/PMC3005925/ /pubmed/21143799 http://dx.doi.org/10.1186/1471-2164-11-S4-S16 Text en Copyright ©2010 Ayukawa et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Proceedings
Ayukawa, Shotaro
Kobayashi, Akio
Nakashima, Yusaku
Takagi, Hidemasa
Hamada, Shogo
Uchiyama, Masahiko
Yugi, Katsuyuki
Murata, Satoshi
Sakakibara, Yasubumi
Hagiya, Masami
Yamamura, Masayuki
Kiga, Daisuke
Construction of a genetic AND gate under a new standard for assembly of genetic parts
title Construction of a genetic AND gate under a new standard for assembly of genetic parts
title_full Construction of a genetic AND gate under a new standard for assembly of genetic parts
title_fullStr Construction of a genetic AND gate under a new standard for assembly of genetic parts
title_full_unstemmed Construction of a genetic AND gate under a new standard for assembly of genetic parts
title_short Construction of a genetic AND gate under a new standard for assembly of genetic parts
title_sort construction of a genetic and gate under a new standard for assembly of genetic parts
topic Proceedings
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3005925/
https://www.ncbi.nlm.nih.gov/pubmed/21143799
http://dx.doi.org/10.1186/1471-2164-11-S4-S16
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