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FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum
The MIPS Fusarium graminearum Genome Database (FGDB) was established as a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat, barley and maize. The current version of FGDB v3.1 provides information on the full manually revised gene set based on the Broad Ins...
Autores principales: | , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013644/ https://www.ncbi.nlm.nih.gov/pubmed/21051345 http://dx.doi.org/10.1093/nar/gkq1016 |
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author | Wong, Philip Walter, Mathias Lee, Wanseon Mannhaupt, Gertrud Münsterkötter, Martin Mewes, Hans-Werner Adam, Gerhard Güldener, Ulrich |
author_facet | Wong, Philip Walter, Mathias Lee, Wanseon Mannhaupt, Gertrud Münsterkötter, Martin Mewes, Hans-Werner Adam, Gerhard Güldener, Ulrich |
author_sort | Wong, Philip |
collection | PubMed |
description | The MIPS Fusarium graminearum Genome Database (FGDB) was established as a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat, barley and maize. The current version of FGDB v3.1 provides information on the full manually revised gene set based on the Broad Institute assembly FG3 genome sequence. The results of gene prediction tools were integrated with the help of comparative data on related species to result in a set of 13.718 annotated protein coding genes. This rigorous approach involved adding or modifying gene models and represents a coding sequence gold standard for the genus Fusarium. The gene loci improvements results in 2461 genes which either are new or have different structures compared to the Broad Institute assembly 3 gene set. Moreover the database serves as a convenient entry point to explore expression data results and to obtain information on the Affymetrix GeneChip probe sets. The resource is accessible on http://mips.gsf.de/genre/proj/FGDB/. |
format | Text |
id | pubmed-3013644 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-30136442011-01-03 FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum Wong, Philip Walter, Mathias Lee, Wanseon Mannhaupt, Gertrud Münsterkötter, Martin Mewes, Hans-Werner Adam, Gerhard Güldener, Ulrich Nucleic Acids Res Articles The MIPS Fusarium graminearum Genome Database (FGDB) was established as a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat, barley and maize. The current version of FGDB v3.1 provides information on the full manually revised gene set based on the Broad Institute assembly FG3 genome sequence. The results of gene prediction tools were integrated with the help of comparative data on related species to result in a set of 13.718 annotated protein coding genes. This rigorous approach involved adding or modifying gene models and represents a coding sequence gold standard for the genus Fusarium. The gene loci improvements results in 2461 genes which either are new or have different structures compared to the Broad Institute assembly 3 gene set. Moreover the database serves as a convenient entry point to explore expression data results and to obtain information on the Affymetrix GeneChip probe sets. The resource is accessible on http://mips.gsf.de/genre/proj/FGDB/. Oxford University Press 2011-01 2010-11-04 /pmc/articles/PMC3013644/ /pubmed/21051345 http://dx.doi.org/10.1093/nar/gkq1016 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Wong, Philip Walter, Mathias Lee, Wanseon Mannhaupt, Gertrud Münsterkötter, Martin Mewes, Hans-Werner Adam, Gerhard Güldener, Ulrich FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum |
title | FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum |
title_full | FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum |
title_fullStr | FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum |
title_full_unstemmed | FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum |
title_short | FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum |
title_sort | fgdb: revisiting the genome annotation of the plant pathogen fusarium graminearum |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013644/ https://www.ncbi.nlm.nih.gov/pubmed/21051345 http://dx.doi.org/10.1093/nar/gkq1016 |
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