Cargando…

The RCSB Protein Data Bank: redesigned web site and web services

The RCSB Protein Data Bank (RCSB PDB) web site (http://www.pdb.org) has been redesigned to increase usability and to cater to a larger and more diverse user base. This article describes key enhancements and new features that fall into the following categories: (i) query and analysis tools for chemic...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rose, Peter W., Beran, Bojan, Bi, Chunxiao, Bluhm, Wolfgang F., Dimitropoulos, Dimitris, Goodsell, David S., Prlić, Andreas, Quesada, Martha, Quinn, Gregory B., Westbrook, John D., Young, Jasmine, Yukich, Benjamin, Zardecki, Christine, Berman, Helen M., Bourne, Philip E.
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2011
Materias:	Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013649/ https://www.ncbi.nlm.nih.gov/pubmed/21036868 http://dx.doi.org/10.1093/nar/gkq1021

Ejemplares similares

Quality assurance for the query and distribution systems of the RCSB Protein Data Bank
por: Bluhm, Wolfgang F., et al.
Publicado: (2011)

The RCSB Protein Data Bank: new resources for research and education
por: Rose, Peter W., et al.
Publicado: (2013)

Integration of open access literature into the RCSB Protein Data Bank using BioLit
por: Prlić, Andreas, et al.
Publicado: (2010)

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
por: Rose, Peter W., et al.
Publicado: (2014)

RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank
por: Quinn, Gregory B., et al.
Publicado: (2015)

The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema
por: Deshpande, Nita, et al.
Publicado: (2005)

The RCSB protein data bank: integrative view of protein, gene and 3D structural information
por: Rose, Peter W., et al.
Publicado: (2017)

Interesting Structures: Education and Outreach at the RCSB Protein Data Bank
por: Zardecki, Christine
Publicado: (2008)

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education
por: Burley, Stephen K., et al.
Publicado: (2017)

Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences
por: Dutta, Shuchismita, et al.
Publicado: (2010)

The RCSB PDB “Molecule of the Month”: Inspiring a Molecular View of Biology
por: Goodsell, David S., et al.
Publicado: (2015)

Exploring protein symmetry at the RCSB Protein Data Bank
por: Duarte, Jose M., et al.
Publicado: (2022)

Pre-calculated protein structure alignments at the RCSB PDB website
por: Prlić, Andreas, et al.
Publicado: (2010)

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
por: Burley, Stephen K, et al.
Publicado: (2019)

BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank
por: Gao, Jianjiong, et al.
Publicado: (2017)

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D
por: Burley, Stephen K., et al.
Publicado: (2022)

The RCSB PDB information portal for structural genomics
por: Kouranov, Andrei, et al.
Publicado: (2006)

RCSB Protein Data Bank 1D tools and services
por: Segura, Joan, et al.
Publicado: (2020)

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning
por: Burley, Stephen K, et al.
Publicado: (2022)

Will Widgets and Semantic Tagging Change Computational Biology?
por: Bourne, Philip E., et al.
Publicado: (2010)

Chemical annotation of small and peptide-like molecules at the Protein Data Bank
por: Young, Jasmine Y., et al.
Publicado: (2013)

RCSB Protein Data Bank resources for structure-facilitated design of mRNA vaccines for existing and emerging viral pathogens
por: Goodsell, David S., et al.
Publicado: (2022)

RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study
por: Goodsell, David S., et al.
Publicado: (2020)

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank
por: Prlić, Andreas, et al.
Publicado: (2016)

RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB
por: Bittrich, Sebastian, et al.
Publicado: (2021)

RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive
por: Rose, Yana, et al.
Publicado: (2021)

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
por: Burley, Stephen K, et al.
Publicado: (2020)

Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank
por: Dutta, Shuchismita, et al.
Publicado: (2014)

Web ReDesign 2.0: workflow that works
por: Goto, Kelly, et al.
Publicado: (2004)

Remediation of the protein data bank archive
por: Henrick, Kim, et al.
Publicado: (2008)

RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies
por: Segura, Joan, et al.
Publicado: (2022)

Parasites in Food Webs: Untangling the Entangled Bank
por: Chase, Jonathan
Publicado: (2013)

Insights from 20 years of the Molecule of the Month
por: Goodsell, David S., et al.
Publicado: (2020)

CryoWEB: Web software for the documentation of the cryo-preserved material in animal gene banks
por: Duchev, Zhivko, et al.
Publicado: (2010)

RNA-Redesign: a web server for fixed-backbone 3D design of RNA
por: Yesselman, Joseph D., et al.
Publicado: (2015)

Data on post bank customer reviews from web
por: Plotnikov, Andrei, et al.
Publicado: (2020)

Web-based 3D-visualization of the DrugBank chemical space
por: Awale, Mahendra, et al.
Publicado: (2016)

Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future
por: Burley, Stephen K., et al.
Publicado: (2022)

Redesigning a Web-Based Stakeholder Consensus Meeting About Core Outcomes for Clinical Trials: Formative Feedback Study
por: Katiri, Roulla, et al.
Publicado: (2021)

Conformational dynamism for DNA interaction in the Salmonella RcsB response regulator
por: Casino, Patricia, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_m7ah82dlq6goug3l2bs5e312qc