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AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies

Phytohormone studies enlightened our knowledge of plant responses to various changes. To provide a systematic and comprehensive view of genes participating in plant hormonal regulation, an online accessible database Arabidopsis Hormone Database (AHD) has been developed, which is a collection of horm...

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Detalles Bibliográficos
Autores principales: Jiang, Zhiqiang, Liu, Xiaochuan, Peng, Zhiyu, Wan, Yinan, Ji, Yusi, He, Wenrong, Wan, Wen, Luo, Jingchu, Guo, Hongwei
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013673/
https://www.ncbi.nlm.nih.gov/pubmed/21045062
http://dx.doi.org/10.1093/nar/gkq1066
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author Jiang, Zhiqiang
Liu, Xiaochuan
Peng, Zhiyu
Wan, Yinan
Ji, Yusi
He, Wenrong
Wan, Wen
Luo, Jingchu
Guo, Hongwei
author_facet Jiang, Zhiqiang
Liu, Xiaochuan
Peng, Zhiyu
Wan, Yinan
Ji, Yusi
He, Wenrong
Wan, Wen
Luo, Jingchu
Guo, Hongwei
author_sort Jiang, Zhiqiang
collection PubMed
description Phytohormone studies enlightened our knowledge of plant responses to various changes. To provide a systematic and comprehensive view of genes participating in plant hormonal regulation, an online accessible database Arabidopsis Hormone Database (AHD) has been developed, which is a collection of hormone related genes of the model organism Arabidopsis thaliana (AHRGs). Recently we updated our database from AHD to a new version AHD2.0 by adding several pronounced features: (i) updating our collection of AHRGs based on most recent publications as well as constructing elaborate schematic diagrams of each hormone biosynthesis and signaling pathways; (ii) adding orthologs of sequenced plants listed in OrthoMCL-DB to each AHRG in the updated database; (iii) providing predicted miRNA splicing site(s) for each AHRG; (iv) integrating genes that genetically interact with each AHRG according to literatures mining; (v) providing links to a powerful online analysis platform WebLab for the convenience of in-time bioinformatics analysis and (vi) providing links to widely used protein databases and integrating more expression profiling information that would facilitate users for a more systematic and integrative analysis related to phytohormone research.
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spelling pubmed-30136732011-01-03 AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies Jiang, Zhiqiang Liu, Xiaochuan Peng, Zhiyu Wan, Yinan Ji, Yusi He, Wenrong Wan, Wen Luo, Jingchu Guo, Hongwei Nucleic Acids Res Articles Phytohormone studies enlightened our knowledge of plant responses to various changes. To provide a systematic and comprehensive view of genes participating in plant hormonal regulation, an online accessible database Arabidopsis Hormone Database (AHD) has been developed, which is a collection of hormone related genes of the model organism Arabidopsis thaliana (AHRGs). Recently we updated our database from AHD to a new version AHD2.0 by adding several pronounced features: (i) updating our collection of AHRGs based on most recent publications as well as constructing elaborate schematic diagrams of each hormone biosynthesis and signaling pathways; (ii) adding orthologs of sequenced plants listed in OrthoMCL-DB to each AHRG in the updated database; (iii) providing predicted miRNA splicing site(s) for each AHRG; (iv) integrating genes that genetically interact with each AHRG according to literatures mining; (v) providing links to a powerful online analysis platform WebLab for the convenience of in-time bioinformatics analysis and (vi) providing links to widely used protein databases and integrating more expression profiling information that would facilitate users for a more systematic and integrative analysis related to phytohormone research. Oxford University Press 2011-01 2010-11-02 /pmc/articles/PMC3013673/ /pubmed/21045062 http://dx.doi.org/10.1093/nar/gkq1066 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Jiang, Zhiqiang
Liu, Xiaochuan
Peng, Zhiyu
Wan, Yinan
Ji, Yusi
He, Wenrong
Wan, Wen
Luo, Jingchu
Guo, Hongwei
AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies
title AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies
title_full AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies
title_fullStr AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies
title_full_unstemmed AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies
title_short AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies
title_sort ahd2.0: an update version of arabidopsis hormone database for plant systematic studies
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013673/
https://www.ncbi.nlm.nih.gov/pubmed/21045062
http://dx.doi.org/10.1093/nar/gkq1066
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