Cargando…
AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies
Phytohormone studies enlightened our knowledge of plant responses to various changes. To provide a systematic and comprehensive view of genes participating in plant hormonal regulation, an online accessible database Arabidopsis Hormone Database (AHD) has been developed, which is a collection of horm...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2011
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013673/ https://www.ncbi.nlm.nih.gov/pubmed/21045062 http://dx.doi.org/10.1093/nar/gkq1066 |
_version_ | 1782195301585518592 |
---|---|
author | Jiang, Zhiqiang Liu, Xiaochuan Peng, Zhiyu Wan, Yinan Ji, Yusi He, Wenrong Wan, Wen Luo, Jingchu Guo, Hongwei |
author_facet | Jiang, Zhiqiang Liu, Xiaochuan Peng, Zhiyu Wan, Yinan Ji, Yusi He, Wenrong Wan, Wen Luo, Jingchu Guo, Hongwei |
author_sort | Jiang, Zhiqiang |
collection | PubMed |
description | Phytohormone studies enlightened our knowledge of plant responses to various changes. To provide a systematic and comprehensive view of genes participating in plant hormonal regulation, an online accessible database Arabidopsis Hormone Database (AHD) has been developed, which is a collection of hormone related genes of the model organism Arabidopsis thaliana (AHRGs). Recently we updated our database from AHD to a new version AHD2.0 by adding several pronounced features: (i) updating our collection of AHRGs based on most recent publications as well as constructing elaborate schematic diagrams of each hormone biosynthesis and signaling pathways; (ii) adding orthologs of sequenced plants listed in OrthoMCL-DB to each AHRG in the updated database; (iii) providing predicted miRNA splicing site(s) for each AHRG; (iv) integrating genes that genetically interact with each AHRG according to literatures mining; (v) providing links to a powerful online analysis platform WebLab for the convenience of in-time bioinformatics analysis and (vi) providing links to widely used protein databases and integrating more expression profiling information that would facilitate users for a more systematic and integrative analysis related to phytohormone research. |
format | Text |
id | pubmed-3013673 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-30136732011-01-03 AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies Jiang, Zhiqiang Liu, Xiaochuan Peng, Zhiyu Wan, Yinan Ji, Yusi He, Wenrong Wan, Wen Luo, Jingchu Guo, Hongwei Nucleic Acids Res Articles Phytohormone studies enlightened our knowledge of plant responses to various changes. To provide a systematic and comprehensive view of genes participating in plant hormonal regulation, an online accessible database Arabidopsis Hormone Database (AHD) has been developed, which is a collection of hormone related genes of the model organism Arabidopsis thaliana (AHRGs). Recently we updated our database from AHD to a new version AHD2.0 by adding several pronounced features: (i) updating our collection of AHRGs based on most recent publications as well as constructing elaborate schematic diagrams of each hormone biosynthesis and signaling pathways; (ii) adding orthologs of sequenced plants listed in OrthoMCL-DB to each AHRG in the updated database; (iii) providing predicted miRNA splicing site(s) for each AHRG; (iv) integrating genes that genetically interact with each AHRG according to literatures mining; (v) providing links to a powerful online analysis platform WebLab for the convenience of in-time bioinformatics analysis and (vi) providing links to widely used protein databases and integrating more expression profiling information that would facilitate users for a more systematic and integrative analysis related to phytohormone research. Oxford University Press 2011-01 2010-11-02 /pmc/articles/PMC3013673/ /pubmed/21045062 http://dx.doi.org/10.1093/nar/gkq1066 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Jiang, Zhiqiang Liu, Xiaochuan Peng, Zhiyu Wan, Yinan Ji, Yusi He, Wenrong Wan, Wen Luo, Jingchu Guo, Hongwei AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies |
title | AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies |
title_full | AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies |
title_fullStr | AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies |
title_full_unstemmed | AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies |
title_short | AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies |
title_sort | ahd2.0: an update version of arabidopsis hormone database for plant systematic studies |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013673/ https://www.ncbi.nlm.nih.gov/pubmed/21045062 http://dx.doi.org/10.1093/nar/gkq1066 |
work_keys_str_mv | AT jiangzhiqiang ahd20anupdateversionofarabidopsishormonedatabaseforplantsystematicstudies AT liuxiaochuan ahd20anupdateversionofarabidopsishormonedatabaseforplantsystematicstudies AT pengzhiyu ahd20anupdateversionofarabidopsishormonedatabaseforplantsystematicstudies AT wanyinan ahd20anupdateversionofarabidopsishormonedatabaseforplantsystematicstudies AT jiyusi ahd20anupdateversionofarabidopsishormonedatabaseforplantsystematicstudies AT hewenrong ahd20anupdateversionofarabidopsishormonedatabaseforplantsystematicstudies AT wanwen ahd20anupdateversionofarabidopsishormonedatabaseforplantsystematicstudies AT luojingchu ahd20anupdateversionofarabidopsishormonedatabaseforplantsystematicstudies AT guohongwei ahd20anupdateversionofarabidopsishormonedatabaseforplantsystematicstudies |