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PCRPi-DB: a database of computationally annotated hot spots in protein interfaces
Protein–protein interactions are central to almost any cellular process. Although typically protein interfaces are large, it is well established that only a relatively small region, the so-called ‘hot spot’, contributes the most to the total binding energy. There is a clear interest in identifying h...
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Formato: | Texto |
Lenguaje: | English |
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Oxford University Press
2011
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013674/ https://www.ncbi.nlm.nih.gov/pubmed/21097468 http://dx.doi.org/10.1093/nar/gkq1068 |
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author | Segura, Joan Fernandez-Fuentes, Narcis |
author_facet | Segura, Joan Fernandez-Fuentes, Narcis |
author_sort | Segura, Joan |
collection | PubMed |
description | Protein–protein interactions are central to almost any cellular process. Although typically protein interfaces are large, it is well established that only a relatively small region, the so-called ‘hot spot’, contributes the most to the total binding energy. There is a clear interest in identifying hot spots because of its application in drug discovery and protein design. Presaging Critical Residues in Protein Interfaces Database (PCRPi-DB) is a public repository that archives computationally annotated hot spots in protein complexes for which the 3D structure is known. Hot spots have been annotated using a new and highly accurate computational method developed in the lab. PCRPi-DB is freely available to the scientific community at http://www.bioinsilico.org/PCRPIDB. Besides browsing and querying the contents of the database, extensive documentation and links to relevant on-line resources and contents are available to users. PCRPi-DB is updated on a weekly basis. |
format | Text |
id | pubmed-3013674 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-30136742011-01-03 PCRPi-DB: a database of computationally annotated hot spots in protein interfaces Segura, Joan Fernandez-Fuentes, Narcis Nucleic Acids Res Articles Protein–protein interactions are central to almost any cellular process. Although typically protein interfaces are large, it is well established that only a relatively small region, the so-called ‘hot spot’, contributes the most to the total binding energy. There is a clear interest in identifying hot spots because of its application in drug discovery and protein design. Presaging Critical Residues in Protein Interfaces Database (PCRPi-DB) is a public repository that archives computationally annotated hot spots in protein complexes for which the 3D structure is known. Hot spots have been annotated using a new and highly accurate computational method developed in the lab. PCRPi-DB is freely available to the scientific community at http://www.bioinsilico.org/PCRPIDB. Besides browsing and querying the contents of the database, extensive documentation and links to relevant on-line resources and contents are available to users. PCRPi-DB is updated on a weekly basis. Oxford University Press 2011-01 2010-11-18 /pmc/articles/PMC3013674/ /pubmed/21097468 http://dx.doi.org/10.1093/nar/gkq1068 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Segura, Joan Fernandez-Fuentes, Narcis PCRPi-DB: a database of computationally annotated hot spots in protein interfaces |
title | PCRPi-DB: a database of computationally annotated hot spots in protein interfaces |
title_full | PCRPi-DB: a database of computationally annotated hot spots in protein interfaces |
title_fullStr | PCRPi-DB: a database of computationally annotated hot spots in protein interfaces |
title_full_unstemmed | PCRPi-DB: a database of computationally annotated hot spots in protein interfaces |
title_short | PCRPi-DB: a database of computationally annotated hot spots in protein interfaces |
title_sort | pcrpi-db: a database of computationally annotated hot spots in protein interfaces |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013674/ https://www.ncbi.nlm.nih.gov/pubmed/21097468 http://dx.doi.org/10.1093/nar/gkq1068 |
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