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ZFIN: enhancements and updates to the zebrafish model organism database

ZFIN, the Zebrafish Model Organism Database, http://zfin.org, serves as the central repository and web-based resource for zebrafish genetic, genomic, phenotypic and developmental data. ZFIN manually curates comprehensive data for zebrafish genes, phenotypes, genotypes, gene expression, antibodies, a...

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Detalles Bibliográficos
Autores principales: Bradford, Yvonne, Conlin, Tom, Dunn, Nathan, Fashena, David, Frazer, Ken, Howe, Douglas G., Knight, Jonathan, Mani, Prita, Martin, Ryan, Moxon, Sierra A. T., Paddock, Holly, Pich, Christian, Ramachandran, Sridhar, Ruef, Barbara J., Ruzicka, Leyla, Bauer Schaper, Holle, Schaper, Kevin, Shao, Xiang, Singer, Amy, Sprague, Judy, Sprunger, Brock, Van Slyke, Ceri, Westerfield, Monte
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013679/
https://www.ncbi.nlm.nih.gov/pubmed/21036866
http://dx.doi.org/10.1093/nar/gkq1077
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author Bradford, Yvonne
Conlin, Tom
Dunn, Nathan
Fashena, David
Frazer, Ken
Howe, Douglas G.
Knight, Jonathan
Mani, Prita
Martin, Ryan
Moxon, Sierra A. T.
Paddock, Holly
Pich, Christian
Ramachandran, Sridhar
Ruef, Barbara J.
Ruzicka, Leyla
Bauer Schaper, Holle
Schaper, Kevin
Shao, Xiang
Singer, Amy
Sprague, Judy
Sprunger, Brock
Van Slyke, Ceri
Westerfield, Monte
author_facet Bradford, Yvonne
Conlin, Tom
Dunn, Nathan
Fashena, David
Frazer, Ken
Howe, Douglas G.
Knight, Jonathan
Mani, Prita
Martin, Ryan
Moxon, Sierra A. T.
Paddock, Holly
Pich, Christian
Ramachandran, Sridhar
Ruef, Barbara J.
Ruzicka, Leyla
Bauer Schaper, Holle
Schaper, Kevin
Shao, Xiang
Singer, Amy
Sprague, Judy
Sprunger, Brock
Van Slyke, Ceri
Westerfield, Monte
author_sort Bradford, Yvonne
collection PubMed
description ZFIN, the Zebrafish Model Organism Database, http://zfin.org, serves as the central repository and web-based resource for zebrafish genetic, genomic, phenotypic and developmental data. ZFIN manually curates comprehensive data for zebrafish genes, phenotypes, genotypes, gene expression, antibodies, anatomical structures and publications. A wide-ranging collection of web-based search forms and tools facilitates access to integrated views of these data promoting analysis and scientific discovery. Data represented in ZFIN are derived from three primary sources: curation of zebrafish publications, individual research laboratories and collaborations with bioinformatics organizations. Data formats include text, images and graphical representations. ZFIN is a dynamic resource with data added daily as part of our ongoing curation process. Software updates are frequent. Here, we describe recent additions to ZFIN including (i) enhanced access to images, (ii) genomic features, (iii) genome browser, (iv) transcripts, (v) antibodies and (vi) a community wiki for protocols and antibodies.
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spelling pubmed-30136792011-01-03 ZFIN: enhancements and updates to the zebrafish model organism database Bradford, Yvonne Conlin, Tom Dunn, Nathan Fashena, David Frazer, Ken Howe, Douglas G. Knight, Jonathan Mani, Prita Martin, Ryan Moxon, Sierra A. T. Paddock, Holly Pich, Christian Ramachandran, Sridhar Ruef, Barbara J. Ruzicka, Leyla Bauer Schaper, Holle Schaper, Kevin Shao, Xiang Singer, Amy Sprague, Judy Sprunger, Brock Van Slyke, Ceri Westerfield, Monte Nucleic Acids Res Articles ZFIN, the Zebrafish Model Organism Database, http://zfin.org, serves as the central repository and web-based resource for zebrafish genetic, genomic, phenotypic and developmental data. ZFIN manually curates comprehensive data for zebrafish genes, phenotypes, genotypes, gene expression, antibodies, anatomical structures and publications. A wide-ranging collection of web-based search forms and tools facilitates access to integrated views of these data promoting analysis and scientific discovery. Data represented in ZFIN are derived from three primary sources: curation of zebrafish publications, individual research laboratories and collaborations with bioinformatics organizations. Data formats include text, images and graphical representations. ZFIN is a dynamic resource with data added daily as part of our ongoing curation process. Software updates are frequent. Here, we describe recent additions to ZFIN including (i) enhanced access to images, (ii) genomic features, (iii) genome browser, (iv) transcripts, (v) antibodies and (vi) a community wiki for protocols and antibodies. Oxford University Press 2011-01 2010-10-29 /pmc/articles/PMC3013679/ /pubmed/21036866 http://dx.doi.org/10.1093/nar/gkq1077 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Bradford, Yvonne
Conlin, Tom
Dunn, Nathan
Fashena, David
Frazer, Ken
Howe, Douglas G.
Knight, Jonathan
Mani, Prita
Martin, Ryan
Moxon, Sierra A. T.
Paddock, Holly
Pich, Christian
Ramachandran, Sridhar
Ruef, Barbara J.
Ruzicka, Leyla
Bauer Schaper, Holle
Schaper, Kevin
Shao, Xiang
Singer, Amy
Sprague, Judy
Sprunger, Brock
Van Slyke, Ceri
Westerfield, Monte
ZFIN: enhancements and updates to the zebrafish model organism database
title ZFIN: enhancements and updates to the zebrafish model organism database
title_full ZFIN: enhancements and updates to the zebrafish model organism database
title_fullStr ZFIN: enhancements and updates to the zebrafish model organism database
title_full_unstemmed ZFIN: enhancements and updates to the zebrafish model organism database
title_short ZFIN: enhancements and updates to the zebrafish model organism database
title_sort zfin: enhancements and updates to the zebrafish model organism database
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013679/
https://www.ncbi.nlm.nih.gov/pubmed/21036866
http://dx.doi.org/10.1093/nar/gkq1077
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