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Gramene database in 2010: updates and extensions

Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several spec...

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Autores principales: Youens-Clark, Ken, Buckler, Ed, Casstevens, Terry, Chen, Charles, DeClerck, Genevieve, Derwent, Paul, Dharmawardhana, Palitha, Jaiswal, Pankaj, Kersey, Paul, Karthikeyan, A. S., Lu, Jerry, McCouch, Susan R., Ren, Liya, Spooner, William, Stein, Joshua C., Thomason, Jim, Wei, Sharon, Ware, Doreen
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013721/
https://www.ncbi.nlm.nih.gov/pubmed/21076153
http://dx.doi.org/10.1093/nar/gkq1148
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author Youens-Clark, Ken
Buckler, Ed
Casstevens, Terry
Chen, Charles
DeClerck, Genevieve
Derwent, Paul
Dharmawardhana, Palitha
Jaiswal, Pankaj
Kersey, Paul
Karthikeyan, A. S.
Lu, Jerry
McCouch, Susan R.
Ren, Liya
Spooner, William
Stein, Joshua C.
Thomason, Jim
Wei, Sharon
Ware, Doreen
author_facet Youens-Clark, Ken
Buckler, Ed
Casstevens, Terry
Chen, Charles
DeClerck, Genevieve
Derwent, Paul
Dharmawardhana, Palitha
Jaiswal, Pankaj
Kersey, Paul
Karthikeyan, A. S.
Lu, Jerry
McCouch, Susan R.
Ren, Liya
Spooner, William
Stein, Joshua C.
Thomason, Jim
Wei, Sharon
Ware, Doreen
author_sort Youens-Clark, Ken
collection PubMed
description Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several species of rice. Gramene began with the addition of an Ensembl genome browser and has expanded in the last decade to become a robust resource for plant genomics hosting a wide array of data sets including quantitative trait loci (QTL), metabolic pathways, genetic diversity, genes, proteins, germplasm, literature, ontologies and a fully-structured markers and sequences database integrated with genome browsers and maps from various published studies (genetic, physical, bin, etc.). In addition, Gramene now hosts a variety of web services including a Distributed Annotation Server (DAS), BLAST and a public MySQL database. Twice a year, Gramene releases a major build of the database and makes interim releases to correct errors or to make important updates to software and/or data.
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spelling pubmed-30137212011-01-03 Gramene database in 2010: updates and extensions Youens-Clark, Ken Buckler, Ed Casstevens, Terry Chen, Charles DeClerck, Genevieve Derwent, Paul Dharmawardhana, Palitha Jaiswal, Pankaj Kersey, Paul Karthikeyan, A. S. Lu, Jerry McCouch, Susan R. Ren, Liya Spooner, William Stein, Joshua C. Thomason, Jim Wei, Sharon Ware, Doreen Nucleic Acids Res Articles Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several species of rice. Gramene began with the addition of an Ensembl genome browser and has expanded in the last decade to become a robust resource for plant genomics hosting a wide array of data sets including quantitative trait loci (QTL), metabolic pathways, genetic diversity, genes, proteins, germplasm, literature, ontologies and a fully-structured markers and sequences database integrated with genome browsers and maps from various published studies (genetic, physical, bin, etc.). In addition, Gramene now hosts a variety of web services including a Distributed Annotation Server (DAS), BLAST and a public MySQL database. Twice a year, Gramene releases a major build of the database and makes interim releases to correct errors or to make important updates to software and/or data. Oxford University Press 2011-01 2010-11-13 /pmc/articles/PMC3013721/ /pubmed/21076153 http://dx.doi.org/10.1093/nar/gkq1148 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Youens-Clark, Ken
Buckler, Ed
Casstevens, Terry
Chen, Charles
DeClerck, Genevieve
Derwent, Paul
Dharmawardhana, Palitha
Jaiswal, Pankaj
Kersey, Paul
Karthikeyan, A. S.
Lu, Jerry
McCouch, Susan R.
Ren, Liya
Spooner, William
Stein, Joshua C.
Thomason, Jim
Wei, Sharon
Ware, Doreen
Gramene database in 2010: updates and extensions
title Gramene database in 2010: updates and extensions
title_full Gramene database in 2010: updates and extensions
title_fullStr Gramene database in 2010: updates and extensions
title_full_unstemmed Gramene database in 2010: updates and extensions
title_short Gramene database in 2010: updates and extensions
title_sort gramene database in 2010: updates and extensions
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013721/
https://www.ncbi.nlm.nih.gov/pubmed/21076153
http://dx.doi.org/10.1093/nar/gkq1148
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