Towards BioDBcore: a community-defined information specification for biological databases

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The present article proposes the adoption of a community-defined, uniform, generic description of the core attributes of biological databases, BioDBCore. The goals of these attributes are to provide a general overview of the database landscape, to encourage consistency and interoperability between r...

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Detalles Bibliográficos
Autores principales: Gaudet, Pascale, Bairoch, Amos, Field, Dawn, Sansone, Susanna-Assunta, Taylor, Chris, Attwood, Teresa K., Bateman, Alex, Blake, Judith A., Bult, Carol J., Cherry, J. Michael, Chisholm, Rex L., Cochrane, Guy, Cook, Charles E., Eppig, Janan T., Galperin, Michael Y., Gentleman, Robert, Goble, Carole A., Gojobori, Takashi, Hancock, John M., Howe, Douglas G., Imanishi, Tadashi, Kelso, Janet, Landsman, David, Lewis, Suzanna E., Mizrachi, Ilene Karsch, Orchard, Sandra, Ouellette, B. F. Francis, Ranganathan, Shoba, Richardson, Lorna, Rocca-Serra, Philippe, Schofield, Paul N., Smedley, Damian, Southan, Christopher, Tan, Tin Wee, Tatusova, Tatiana, Whetzel, Patricia L., White, Owen, Yamasaki, Chisato
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013734/
https://www.ncbi.nlm.nih.gov/pubmed/21097465
http://dx.doi.org/10.1093/nar/gkq1173
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author Gaudet, Pascale
Bairoch, Amos
Field, Dawn
Sansone, Susanna-Assunta
Taylor, Chris
Attwood, Teresa K.
Bateman, Alex
Blake, Judith A.
Bult, Carol J.
Cherry, J. Michael
Chisholm, Rex L.
Cochrane, Guy
Cook, Charles E.
Eppig, Janan T.
Galperin, Michael Y.
Gentleman, Robert
Goble, Carole A.
Gojobori, Takashi
Hancock, John M.
Howe, Douglas G.
Imanishi, Tadashi
Kelso, Janet
Landsman, David
Lewis, Suzanna E.
Mizrachi, Ilene Karsch
Orchard, Sandra
Ouellette, B. F. Francis
Ranganathan, Shoba
Richardson, Lorna
Rocca-Serra, Philippe
Schofield, Paul N.
Smedley, Damian
Southan, Christopher
Tan, Tin Wee
Tatusova, Tatiana
Whetzel, Patricia L.
White, Owen
Yamasaki, Chisato
author_facet Gaudet, Pascale
Bairoch, Amos
Field, Dawn
Sansone, Susanna-Assunta
Taylor, Chris
Attwood, Teresa K.
Bateman, Alex
Blake, Judith A.
Bult, Carol J.
Cherry, J. Michael
Chisholm, Rex L.
Cochrane, Guy
Cook, Charles E.
Eppig, Janan T.
Galperin, Michael Y.
Gentleman, Robert
Goble, Carole A.
Gojobori, Takashi
Hancock, John M.
Howe, Douglas G.
Imanishi, Tadashi
Kelso, Janet
Landsman, David
Lewis, Suzanna E.
Mizrachi, Ilene Karsch
Orchard, Sandra
Ouellette, B. F. Francis
Ranganathan, Shoba
Richardson, Lorna
Rocca-Serra, Philippe
Schofield, Paul N.
Smedley, Damian
Southan, Christopher
Tan, Tin Wee
Tatusova, Tatiana
Whetzel, Patricia L.
White, Owen
Yamasaki, Chisato
author_sort Gaudet, Pascale
collection PubMed
description The present article proposes the adoption of a community-defined, uniform, generic description of the core attributes of biological databases, BioDBCore. The goals of these attributes are to provide a general overview of the database landscape, to encourage consistency and interoperability between resources and to promote the use of semantic and syntactic standards. BioDBCore will make it easier for users to evaluate the scope and relevance of available resources. This new resource will increase the collective impact of the information present in biological databases.
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spelling pubmed-30137342011-01-03 Towards BioDBcore: a community-defined information specification for biological databases Gaudet, Pascale Bairoch, Amos Field, Dawn Sansone, Susanna-Assunta Taylor, Chris Attwood, Teresa K. Bateman, Alex Blake, Judith A. Bult, Carol J. Cherry, J. Michael Chisholm, Rex L. Cochrane, Guy Cook, Charles E. Eppig, Janan T. Galperin, Michael Y. Gentleman, Robert Goble, Carole A. Gojobori, Takashi Hancock, John M. Howe, Douglas G. Imanishi, Tadashi Kelso, Janet Landsman, David Lewis, Suzanna E. Mizrachi, Ilene Karsch Orchard, Sandra Ouellette, B. F. Francis Ranganathan, Shoba Richardson, Lorna Rocca-Serra, Philippe Schofield, Paul N. Smedley, Damian Southan, Christopher Tan, Tin Wee Tatusova, Tatiana Whetzel, Patricia L. White, Owen Yamasaki, Chisato Nucleic Acids Res Articles The present article proposes the adoption of a community-defined, uniform, generic description of the core attributes of biological databases, BioDBCore. The goals of these attributes are to provide a general overview of the database landscape, to encourage consistency and interoperability between resources and to promote the use of semantic and syntactic standards. BioDBCore will make it easier for users to evaluate the scope and relevance of available resources. This new resource will increase the collective impact of the information present in biological databases. Oxford University Press 2011-01 2010-11-18 /pmc/articles/PMC3013734/ /pubmed/21097465 http://dx.doi.org/10.1093/nar/gkq1173 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Gaudet, Pascale
Bairoch, Amos
Field, Dawn
Sansone, Susanna-Assunta
Taylor, Chris
Attwood, Teresa K.
Bateman, Alex
Blake, Judith A.
Bult, Carol J.
Cherry, J. Michael
Chisholm, Rex L.
Cochrane, Guy
Cook, Charles E.
Eppig, Janan T.
Galperin, Michael Y.
Gentleman, Robert
Goble, Carole A.
Gojobori, Takashi
Hancock, John M.
Howe, Douglas G.
Imanishi, Tadashi
Kelso, Janet
Landsman, David
Lewis, Suzanna E.
Mizrachi, Ilene Karsch
Orchard, Sandra
Ouellette, B. F. Francis
Ranganathan, Shoba
Richardson, Lorna
Rocca-Serra, Philippe
Schofield, Paul N.
Smedley, Damian
Southan, Christopher
Tan, Tin Wee
Tatusova, Tatiana
Whetzel, Patricia L.
White, Owen
Yamasaki, Chisato
Towards BioDBcore: a community-defined information specification for biological databases
title Towards BioDBcore: a community-defined information specification for biological databases
title_full Towards BioDBcore: a community-defined information specification for biological databases
title_fullStr Towards BioDBcore: a community-defined information specification for biological databases
title_full_unstemmed Towards BioDBcore: a community-defined information specification for biological databases
title_short Towards BioDBcore: a community-defined information specification for biological databases
title_sort towards biodbcore: a community-defined information specification for biological databases
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013734/
https://www.ncbi.nlm.nih.gov/pubmed/21097465
http://dx.doi.org/10.1093/nar/gkq1173
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