Cargando…

IsoBase: a database of functionally related proteins across PPI networks

We describe IsoBase, a database identifying functionally related proteins, across five major eukaryotic model organisms: Saccharomyces cerevisiae, Drosophila melanogaster, Caenorhabditis elegans, Mus musculus and Homo Sapiens. Nearly all existing algorithms for orthology detection are based on seque...

Descripción completa

Detalles Bibliográficos
Autores principales:	Park, Daniel, Singh, Rohit, Baym, Michael, Liao, Chung-Shou, Berger, Bonnie
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2011
Materias:	Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013743/ https://www.ncbi.nlm.nih.gov/pubmed/21177658 http://dx.doi.org/10.1093/nar/gkq1234

Ejemplares similares

IsoRankN: spectral methods for global alignment of multiple protein networks
por: Liao, Chung-Shou, et al.
Publicado: (2009)

Topsy-Turvy: integrating a global view into sequence-based PPI prediction
por: Singh, Rohit, et al.
Publicado: (2022)

Compressive genomics for protein databases
por: Daniels, Noah M., et al.
Publicado: (2013)

ComPPI: a cellular compartment-specific database for protein–protein interaction network analysis
por: Veres, Daniel V., et al.
Publicado: (2015)

PrePPI: a structure-informed database of protein–protein interactions
por: Zhang, Qiangfeng Cliff, et al.
Publicado: (2013)

iPPI-DB: an online database of modulators of protein–protein interactions
por: Labbé, Céline M., et al.
Publicado: (2016)

Protein-protein interaction networks (PPI) and complex diseases
por: Safari-Alighiarloo, Nahid, et al.
Publicado: (2014)

Optimizing a global alignment of protein interaction networks
por: Chindelevitch, Leonid, et al.
Publicado: (2013)

Decomposing PPI networks for complex discovery
por: Liu, Guimei, et al.
Publicado: (2011)

Inferring pleiotropy by network analysis: linked diseases in the human PPI network
por: Nguyen, Thanh-Phuong, et al.
Publicado: (2011)

ConnectedAlign: a PPI network alignment method for identifying conserved protein complexes across multiple species
por: Gao, Jianliang, et al.
Publicado: (2018)

An Extensive Assessment of Network Embedding in PPI Network Alignment
por: Milano, Marianna, et al.
Publicado: (2022)

Detecting overlapping protein complexes in PPI networks based on robustness
por: Wang, Shuliang, et al.
Publicado: (2013)

A method for predicting protein complex in dynamic PPI networks
por: Zhang, Yijia, et al.
Publicado: (2016)

The iPPI-DB initiative: a community-centered database of protein–protein interaction modulators
por: Torchet, Rachel, et al.
Publicado: (2021)

Ranking Cancer Proteins by Integrating PPI Network and Protein Expression Profiles
por: Ren, Jie, et al.
Publicado: (2019)

Integrating PPI datasets with the PPI data from biomedical literature for protein complex detection
por: Yang, Zhi Hao, et al.
Publicado: (2014)

Construction of IsoVoc Database for the Authentication of Natural Flavours
por: Strojnik, Lidija, et al.
Publicado: (2021)

ABC and IFC: Modules Detection Method for PPI Network
por: Lei, Xiujuan, et al.
Publicado: (2014)

Detangling PPI networks to uncover functionally meaningful clusters
por: Hall-Swan, Sarah, et al.
Publicado: (2018)

Predicting essential proteins based on subcellular localization, orthology and PPI networks
por: Li, Gaoshi, et al.
Publicado: (2016)

Predicting essential proteins by integrating orthology, gene expressions, and PPI networks
por: Zhang, Xue, et al.
Publicado: (2018)

Identification of protein complexes and functional modules in E. coli PPI networks
por: Kong, Ping, et al.
Publicado: (2020)

An Ensemble Learning Framework for Detecting Protein Complexes From PPI Networks
por: Wang, Rongquan, et al.
Publicado: (2022)

Improving protein function prediction using domain and protein complexes in PPI networks
por: Peng, Wei, et al.
Publicado: (2014)

Protein Function Prediction Based on PPI Networks: Network Reconstruction vs Edge Enrichment
por: Zhou, Jiaogen, et al.
Publicado: (2021)

The p.pi- probe
por: Horváth, D
Publicado: (1984)

OCaPPI-Db: an oligonucleotide probe database for pathogen identification through hybridization capture
por: Gasc, Cyrielle, et al.
Publicado: (2017)

The “PPI Hawker”: an innovative method for patient and public involvement (PPI) in health research
por: Luna Puerta, L., et al.
Publicado: (2020)

A core-attachment based method to detect protein complexes in PPI networks
por: Wu, Min, et al.
Publicado: (2009)

Identifying Dynamic Protein Complexes Based on Gene Expression Profiles and PPI Networks
por: Li, Min, et al.
Publicado: (2014)

msiDBN: A Method of Identifying Critical Proteins in Dynamic PPI Networks
por: Zhang, Yuan, et al.
Publicado: (2014)

iOPTICS-GSO for identifying protein complexes from dynamic PPI networks
por: Lei, Xiujuan, et al.
Publicado: (2017)

Identifying protein complex by integrating characteristic of core-attachment into dynamic PPI network
por: Shen, Xianjun, et al.
Publicado: (2017)

A common neighbor based technique to detect protein complexes in PPI networks
por: Haque, Mokhtarul, et al.
Publicado: (2018)

Identifying protein complexes in PPI network using non-cooperative sequential game
por: Maulik, Ujjwal, et al.
Publicado: (2017)

BioAlign: An Accurate Global PPI Network Alignment Algorithm
por: Ayub, Umair, et al.
Publicado: (2022)

Protein–Protein Interaction (PPI) Network of Zebrafish Oestrogen Receptors: A Bioinformatics Workflow
por: Zainal-Abidin, Rabiatul-Adawiah, et al.
Publicado: (2022)

ActivePPI: quantifying protein–protein interaction network activity with Markov random fields
por: Wang, Chuanyuan, et al.
Publicado: (2023)

ISO 14000 - ISO 9000
por: Rothery, Brian

Cannot write session to /tmp/vufind_sessions/sess_lfeqaidtfqqk6e8meglhrcmo80