OMA 2011: orthology inference among 1000 complete genomes

OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genomes. Initiated in 2004, the project is at its 11th release. It now includes 1000 genomes, making it one of the largest resources of its kind. Here, we describe recent developments in terms of spec...

Descripción completa

Detalles Bibliográficos
Autores principales: Altenhoff, Adrian M., Schneider, Adrian, Gonnet, Gaston H., Dessimoz, Christophe
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013747/
https://www.ncbi.nlm.nih.gov/pubmed/21113020
http://dx.doi.org/10.1093/nar/gkq1238
_version_ 1782195320086593536
author Altenhoff, Adrian M.
Schneider, Adrian
Gonnet, Gaston H.
Dessimoz, Christophe
author_facet Altenhoff, Adrian M.
Schneider, Adrian
Gonnet, Gaston H.
Dessimoz, Christophe
author_sort Altenhoff, Adrian M.
collection PubMed
description OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genomes. Initiated in 2004, the project is at its 11th release. It now includes 1000 genomes, making it one of the largest resources of its kind. Here, we describe recent developments in terms of species covered; the algorithmic pipeline—in particular regarding the treatment of alternative splicing, and new features of the web (OMA Browser) and programming interface (SOAP API). In the second part, we review the various representations provided by OMA and their typical applications. The database is publicly accessible at http://omabrowser.org.
format Text
id pubmed-3013747
institution National Center for Biotechnology Information
language English
publishDate 2011
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-30137472011-01-03 OMA 2011: orthology inference among 1000 complete genomes Altenhoff, Adrian M. Schneider, Adrian Gonnet, Gaston H. Dessimoz, Christophe Nucleic Acids Res Articles OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genomes. Initiated in 2004, the project is at its 11th release. It now includes 1000 genomes, making it one of the largest resources of its kind. Here, we describe recent developments in terms of species covered; the algorithmic pipeline—in particular regarding the treatment of alternative splicing, and new features of the web (OMA Browser) and programming interface (SOAP API). In the second part, we review the various representations provided by OMA and their typical applications. The database is publicly accessible at http://omabrowser.org. Oxford University Press 2011-01 2010-11-27 /pmc/articles/PMC3013747/ /pubmed/21113020 http://dx.doi.org/10.1093/nar/gkq1238 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Altenhoff, Adrian M.
Schneider, Adrian
Gonnet, Gaston H.
Dessimoz, Christophe
OMA 2011: orthology inference among 1000 complete genomes
title OMA 2011: orthology inference among 1000 complete genomes
title_full OMA 2011: orthology inference among 1000 complete genomes
title_fullStr OMA 2011: orthology inference among 1000 complete genomes
title_full_unstemmed OMA 2011: orthology inference among 1000 complete genomes
title_short OMA 2011: orthology inference among 1000 complete genomes
title_sort oma 2011: orthology inference among 1000 complete genomes
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013747/
https://www.ncbi.nlm.nih.gov/pubmed/21113020
http://dx.doi.org/10.1093/nar/gkq1238
work_keys_str_mv AT altenhoffadrianm oma2011orthologyinferenceamong1000completegenomes
AT schneideradrian oma2011orthologyinferenceamong1000completegenomes
AT gonnetgastonh oma2011orthologyinferenceamong1000completegenomes
AT dessimozchristophe oma2011orthologyinferenceamong1000completegenomes

Ejemplares similares