Cargando…

A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers

BACKGROUND: Sweetpotato (Ipomoea batatas (L.) Lam.), a hexaploid outcrossing crop, is an important staple and food security crop in developing countries in Africa and Asia. The availability of genomic resources for sweetpotato is in striking contrast to its importance for human nutrition. Previously...

Descripción completa

Detalles Bibliográficos
Autores principales:	Schafleitner, Roland, Tincopa, Luz R, Palomino, Omar, Rossel, Genoveva, Robles, Ronald F, Alagon, Rocio, Rivera, Carlos, Quispe, Cynthia, Rojas, Luis, Pacheco, Jaime A, Solis, Julio, Cerna, Diogenes, Young Kim, Ji, Hou, Jack, Simon, Reinhard
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3017860/ https://www.ncbi.nlm.nih.gov/pubmed/20977749 http://dx.doi.org/10.1186/1471-2164-11-604

Ejemplares similares

Genetic Identity, Diversity, and Population Structure of CIP's Sweetpotato (I. batatas) Germplasm Collection
por: Anglin, Noelle L., et al.
Publicado: (2021)

The horizontal gene transfer of Agrobacterium T-DNAs into the series Batatas (Genus Ipomoea) genome is not confined to hexaploid sweetpotato
por: Quispe-Huamanquispe, Dora G., et al.
Publicado: (2019)

Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches
por: Cheung, Foo, et al.
Publicado: (2008)

Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches
por: Salem, Mohamed, et al.
Publicado: (2010)

Comparing ion torrent with pyrosequencing and Sanger sequencing for the detection of TP53 mutations in colorectal cancer
por: Doyle, Brendan, et al.
Publicado: (2014)

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak
por: Ueno, Saneyoshi, et al.
Publicado: (2010)

Insights into population structure of East African sweetpotato cultivars from hybrid assembly of chloroplast genomes
por: Zhou, Chenxi, et al.
Publicado: (2020)

A Comparison of Parallel Pyrosequencing and Sanger Clone-Based Sequencing and Its Impact on the Characterization of the Genetic Diversity of HIV-1
por: Liang, Binhua, et al.
Publicado: (2011)

Improvement for agronomically important traits by gene engineering in sweetpotato
por: Liu, Qingchang
Publicado: (2017)

SangeR: the high-throughput Sanger sequencing analysis pipeline
por: Schmid, Kai, et al.
Publicado: (2022)

NPM1 Mutation Analysis in Acute Myeloid Leukemia: Comparison of Three Techniques - Sanger Sequencing, Pyrosequencing, and Real-Time Polymerase Chain Reaction
por: Kumar, Dushyant, et al.
Publicado: (2018)

Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX Titanium pyrosequencing
por: Martin, Jean-Francois, et al.
Publicado: (2010)

Microsatellite loci in the tiger shark and cross-species amplification using pyrosequencing technology
por: Mendes, Natália J., et al.
Publicado: (2016)

Isolation and Characterization of Microsatellite Markers for Cotinus coggygria Scop. (Anacardiaceae) by 454 Pyrosequencing
por: Wang, Wei, et al.
Publicado: (2014)

qSanger: Quantification of Genetic Variants in Bacterial Cultures by Sanger Sequencing
por: Prakash, Satya, et al.
Publicado: (2023)

Gene Pool Subdivision of East African Sweetpotato Parental Material
por: David, Maria C., et al.
Publicado: (2018)

Evolution and homoplasy at the Bem6 microsatellite locus in three sweetpotato whitefly (Bemisia tabaci) cryptic species
por: Dickey, Aaron M, et al.
Publicado: (2013)

Robert M. Sanger
Publicado: (1911)

Professor Max Sänger
Publicado: (1903)

Sänger’s Cæsarean Operation
Publicado: (1886)

iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences
por: Zheng, Yi, et al.
Publicado: (2011)

Detection of three closely located single nucleotide polymorphisms in the EAAT2 promoter: comparison of single-strand conformational polymorphism (SSCP), pyrosequencing and Sanger sequencing
por: Rajatileka, Shavanthi, et al.
Publicado: (2014)

A Sanger sequencing protocol for SARS‐CoV‐2 S‐gene
por: Daniels, Rodney S., et al.
Publicado: (2021)

Development of 15 nuclear microsatellite markers in Deuterocohnia (Pitcairnioideae; Bromeliaceae) using 454 pyrosequencing
por: Zenk, Fides Lea, et al.
Publicado: (2018)

454 next generation-sequencing outperforms allele-specific PCR, Sanger sequencing, and pyrosequencing for routine KRAS mutation analysis of formalin-fixed, paraffin-embedded samples
por: Altimari, Annalisa, et al.
Publicado: (2013)

A combined strategy involving Sanger and 454 pyrosequencing increases genomic resources to aid in the management of reproduction, disease control and genetic selection in the turbot (Scophthalmus maximus)
por: Ribas, Laia, et al.
Publicado: (2013)

Genome-wide identification and expression analysis of the polygalacturonase gene family in sweetpotato
por: He, Peiwen, et al.
Publicado: (2023)

Transcriptome Characterization and Gene Changes Induced by Fusarium solani in Sweetpotato Roots
por: Zhang, Chengling, et al.
Publicado: (2023)

Comparison of NGS panel and Sanger sequencing for genotyping CAG repeats in the AR gene
por: Rocca, Maria Santa, et al.
Publicado: (2020)

Genomic surveillance of SARS-CoV-2 Spike gene by sanger sequencing
por: Salles, Tiago Souza, et al.
Publicado: (2022)

Pioneer of the future: Margaret Sanger
Publicado: (1978)

Frederick Sanger (1918–2013)
por: Roe, Bruce A.
Publicado: (2014)

Polymorphic microsatellite loci for Virola sebifera (Myristicaceae) derived from shotgun 454 pyrosequencing(1)
por: Wei, Na, et al.
Publicado: (2013)

Development of 18 polymorphic microsatellite markers for Vinca minor (Apocynaceae) via 454 pyrosequencing(1)
por: Moeller, Sina, et al.
Publicado: (2015)

Segregation of Hydroxycinnamic Acid Esters Mediating Sweetpotato Weevil Resistance in Storage Roots of Sweetpotato
por: Anyanga, Milton O., et al.
Publicado: (2017)

Antennal transcriptome and expression analyses of olfactory genes in the sweetpotato weevil Cylas formicarius
por: Bin, Shu-Ying, et al.
Publicado: (2017)

Transcriptome Analysis Reveals Key Genes Involved in Weevil Resistance in the Hexaploid Sweetpotato
por: Nokihara, Kanoko, et al.
Publicado: (2021)

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
por: DiGuistini, Scott, et al.
Publicado: (2009)

Next-generation sequencing corroborates a probable de novo GNPTG variation previously detected by Sanger sequencing
por: Ludwig, Nataniel Floriano, et al.
Publicado: (2017)

De novo sequencing and analysis of root transcriptome using 454 pyrosequencing to discover putative genes associated with drought tolerance in Ammopiptanthus mongolicus
por: Zhou, Yijun, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_aj4dif6q2nkk611ep62k5581gv