Cargando…
A Bayesian method for single molecule, fluorescence burst analysis
There is currently great interest in determining physical parameters, e.g. fluorescence lifetime, of individual molecules that inform on environmental conditions, whilst avoiding the artefacts of ensemble averaging. Protein interactions, molecular dynamics and sub-species can all be studied. In a bu...
Autores principales: | , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Optical Society of America
2010
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3018088/ https://www.ncbi.nlm.nih.gov/pubmed/21258537 http://dx.doi.org/10.1364/BOE.1.001148 |
_version_ | 1782196019434356736 |
---|---|
author | Barber, P. R. Ameer-Beg, S. M. Pathmananthan, S. Rowley, M. Coolen, A. C. C. |
author_facet | Barber, P. R. Ameer-Beg, S. M. Pathmananthan, S. Rowley, M. Coolen, A. C. C. |
author_sort | Barber, P. R. |
collection | PubMed |
description | There is currently great interest in determining physical parameters, e.g. fluorescence lifetime, of individual molecules that inform on environmental conditions, whilst avoiding the artefacts of ensemble averaging. Protein interactions, molecular dynamics and sub-species can all be studied. In a burst integrated fluorescence lifetime (BIFL) experiment, identification of fluorescent bursts from single molecules above background detection is a problem. This paper presents a Bayesian method for burst identification based on model selection and demonstrates the detection of bursts consisting of 10% signal amplitude. The method also estimates the fluorescence lifetime (and its error) from the burst data. |
format | Text |
id | pubmed-3018088 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Optical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-30180882011-01-21 A Bayesian method for single molecule, fluorescence burst analysis Barber, P. R. Ameer-Beg, S. M. Pathmananthan, S. Rowley, M. Coolen, A. C. C. Biomed Opt Express Optical Biophysics There is currently great interest in determining physical parameters, e.g. fluorescence lifetime, of individual molecules that inform on environmental conditions, whilst avoiding the artefacts of ensemble averaging. Protein interactions, molecular dynamics and sub-species can all be studied. In a burst integrated fluorescence lifetime (BIFL) experiment, identification of fluorescent bursts from single molecules above background detection is a problem. This paper presents a Bayesian method for burst identification based on model selection and demonstrates the detection of bursts consisting of 10% signal amplitude. The method also estimates the fluorescence lifetime (and its error) from the burst data. Optical Society of America 2010-10-12 /pmc/articles/PMC3018088/ /pubmed/21258537 http://dx.doi.org/10.1364/BOE.1.001148 Text en ©2010 Optical Society of America http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License, which permits download and redistribution, provided that the original work is properly cited. This license restricts the article from being modified or used commercially. |
spellingShingle | Optical Biophysics Barber, P. R. Ameer-Beg, S. M. Pathmananthan, S. Rowley, M. Coolen, A. C. C. A Bayesian method for single molecule, fluorescence burst analysis |
title | A Bayesian method for single molecule, fluorescence burst analysis |
title_full | A Bayesian method for single molecule, fluorescence burst analysis |
title_fullStr | A Bayesian method for single molecule, fluorescence burst analysis |
title_full_unstemmed | A Bayesian method for single molecule, fluorescence burst analysis |
title_short | A Bayesian method for single molecule, fluorescence burst analysis |
title_sort | bayesian method for single molecule, fluorescence burst analysis |
topic | Optical Biophysics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3018088/ https://www.ncbi.nlm.nih.gov/pubmed/21258537 http://dx.doi.org/10.1364/BOE.1.001148 |
work_keys_str_mv | AT barberpr abayesianmethodforsinglemoleculefluorescenceburstanalysis AT ameerbegsm abayesianmethodforsinglemoleculefluorescenceburstanalysis AT pathmananthans abayesianmethodforsinglemoleculefluorescenceburstanalysis AT rowleym abayesianmethodforsinglemoleculefluorescenceburstanalysis AT coolenacc abayesianmethodforsinglemoleculefluorescenceburstanalysis AT barberpr bayesianmethodforsinglemoleculefluorescenceburstanalysis AT ameerbegsm bayesianmethodforsinglemoleculefluorescenceburstanalysis AT pathmananthans bayesianmethodforsinglemoleculefluorescenceburstanalysis AT rowleym bayesianmethodforsinglemoleculefluorescenceburstanalysis AT coolenacc bayesianmethodforsinglemoleculefluorescenceburstanalysis |