Cargando…

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

BACKGROUND: Single nucleotide polymorphisms (SNPs) have become the marker of choice for genome-wide association studies. In order to provide the best genome coverage for the analysis of performance and production traits, a large number of relatively evenly distributed SNPs are needed. Gene-associate...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liu, Shikai, Zhou, Zunchun, Lu, Jianguo, Sun, Fanyue, Wang, Shaolin, Liu, Hong, Jiang, Yanliang, Kucuktas, Huseyin, Kaltenboeck, Ludmilla, Peatman, Eric, Liu, Zhanjiang
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3033819/ https://www.ncbi.nlm.nih.gov/pubmed/21255432 http://dx.doi.org/10.1186/1471-2164-12-53

Ejemplares similares

Development of the catfish 250K SNP array for genome-wide association studies
por: Liu, Shikai, et al.
Publicado: (2014)

A pilot study for channel catfish whole genome sequencing and de novo assembly
por: Jiang, Yanliang, et al.
Publicado: (2011)

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote
por: Liu, Shikai, et al.
Publicado: (2012)

Quality assessment parameters for EST-derived SNPs from catfish
por: Wang, Shaolin, et al.
Publicado: (2008)

Identification and Characterization of Full-Length cDNAs in Channel Catfish (Ictalurus punctatus) and Blue Catfish (Ictalurus furcatus)
por: Chen, Fei, et al.
Publicado: (2010)

Second-Generation Genetic Linkage Map of Catfish and Its Integration with the BAC-Based Physical Map
por: Ninwichian, Parichart, et al.
Publicado: (2012)

The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish
por: Lu, Jianguo, et al.
Publicado: (2011)

Generation of Physical Map Contig-Specific Sequences Useful for Whole Genome Sequence Scaffolding
por: Jiang, Yanliang, et al.
Publicado: (2013)

Identification and Analysis of Genome-Wide SNPs Provide Insight into Signatures of Selection and Domestication in Channel Catfish (Ictalurus punctatus)
por: Sun, Luyang, et al.
Publicado: (2014)

Male-Biased Genes in Catfish as Revealed by RNA-Seq Analysis of the Testis Transcriptome
por: Sun, Fanyue, et al.
Publicado: (2013)

DNA Barcoding of Catfish: Species Authentication and Phylogenetic Assessment
por: Wong, Li Lian, et al.
Publicado: (2011)

Comparative analysis of catfish BAC end sequences with the zebrafish genome
por: Liu, Hong, et al.
Publicado: (2009)

Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs
por: Li, Ping, et al.
Publicado: (2007)

Whole genome comparative analysis of channel catfish (Ictalurus punctatus) with four model fish species
por: Jiang, Yanliang, et al.
Publicado: (2013)

Effect of Nutrient Restriction and Re-Feeding on Calpain Family Genes in Skeletal Muscle of Channel Catfish (Ictalurus punctatus)
por: Preziosa, Elena, et al.
Publicado: (2013)

Development of a 690 K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence
por: Zeng, Qifan, et al.
Publicado: (2017)

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
por: Wang, Shaolin, et al.
Publicado: (2010)

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts
por: Liu, Zhanjiang, et al.
Publicado: (2016)

Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements
por: Zhang, Yu, et al.
Publicado: (2013)

Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish
por: Li, Yun, et al.
Publicado: (2015)

Genome-Wide Identification, Characterization and Phylogenetic Analysis of 50 Catfish ATP-Binding Cassette (ABC) Transporter Genes
por: Liu, Shikai, et al.
Publicado: (2013)

Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish
por: Wang, Ruijia, et al.
Publicado: (2013)

Effects of CRISPR/Cas9 dosage on TICAM1 and RBL gene mutation rate, embryonic development, hatchability and fry survival in channel catfish
por: Elaswad, Ahmed, et al.
Publicado: (2018)

Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers
por: Quilang, Jonas, et al.
Publicado: (2007)

A Review of Catfish Genomics: Progress and Perspectives
por: Liu, Zhanjiang
Publicado: (2003)

Large-scale SNP discovery and construction of a high-density genetic map of Colossoma macropomum through genotyping-by-sequencing
por: Nunes, José de Ribamar da Silva, et al.
Publicado: (2017)

The annotation of repetitive elements in the genome of channel catfish (Ictalurus punctatus)
por: Yuan, Zihao, et al.
Publicado: (2018)

The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish
por: Bao, Lisui, et al.
Publicado: (2019)

A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance
por: Geng, Xin, et al.
Publicado: (2015)

Genome-Wide Identification of Hsp40 Genes in Channel Catfish and Their Regulated Expression after Bacterial Infection
por: Song, Lin, et al.
Publicado: (2014)

MethylToSNP: identifying SNPs in Illumina DNA methylation array data
por: LaBarre, Brenna A., et al.
Publicado: (2019)

Restriction site-associated DNA sequencing for SNP discovery and high-density genetic map construction in southern catfish (Silurus meridionalis)
por: Xie, Mimi, et al.
Publicado: (2018)

SNP Discovery from Transcriptome of the Swimbladder of Takifugu rubripes
por: Cui, Jun, et al.
Publicado: (2014)

Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions
por: Waldbieser, Geoffrey C., et al.
Publicado: (2023)

A Genome-Wide Association Study Identifies Multiple Regions Associated with Head Size in Catfish
por: Geng, Xin, et al.
Publicado: (2016)

Identification of an Epigenetically Marked Locus within the Sex Determination Region of Channel Catfish
por: Yang, Yujia, et al.
Publicado: (2022)

Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications
por: Lu, Jianguo, et al.
Publicado: (2012)

Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas)
por: Qi, Haigang, et al.
Publicado: (2017)

Development of a large SNPs resource and a low-density SNP array for brown trout (Salmo trutta) population genetics
por: Saint-Pé, Keoni, et al.
Publicado: (2019)

Genomic imprinting-like monoallelic paternal expression determines sex of channel catfish
por: Wang, Wenwen, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_rh7pf0ug9h2ma8upslne737n21