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Complete genome sequence of Desulfomicrobium baculatum type strain (X(T))

Desulfomicrobium baculatum is the type species of the genus Desulfomicrobium, which is the type genus of the family Desulfomicrobiaceae. It is of phylogenetic interest because of the isolated location of the family Desulfomicrobiaceae within the order Desulfovibrionales. D. baculatum strain X(T) is...

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Autores principales: Copeland, Alex, Spring, Stefan, Göker, Markus, Schneider, Susanne, Lapidus, Alla, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavrommatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia C., Meincke, Linda, Sims, David, Brettin, Thomas, Detter, John C., Han, Cliff, Chain, Patrick, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, Lucas, Susan
Formato: Texto
Lenguaje:English
Publicado: Michigan State University 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035215/
https://www.ncbi.nlm.nih.gov/pubmed/21304634
http://dx.doi.org/10.4056/sigs.13134
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author Copeland, Alex
Spring, Stefan
Göker, Markus
Schneider, Susanne
Lapidus, Alla
Del Rio, Tijana Glavina
Tice, Hope
Cheng, Jan-Fang
Chen, Feng
Nolan, Matt
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Ivanova, Natalia
Mavrommatis, Konstantinos
Ovchinnikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia C.
Meincke, Linda
Sims, David
Brettin, Thomas
Detter, John C.
Han, Cliff
Chain, Patrick
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Lucas, Susan
author_facet Copeland, Alex
Spring, Stefan
Göker, Markus
Schneider, Susanne
Lapidus, Alla
Del Rio, Tijana Glavina
Tice, Hope
Cheng, Jan-Fang
Chen, Feng
Nolan, Matt
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Ivanova, Natalia
Mavrommatis, Konstantinos
Ovchinnikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia C.
Meincke, Linda
Sims, David
Brettin, Thomas
Detter, John C.
Han, Cliff
Chain, Patrick
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Lucas, Susan
author_sort Copeland, Alex
collection PubMed
description Desulfomicrobium baculatum is the type species of the genus Desulfomicrobium, which is the type genus of the family Desulfomicrobiaceae. It is of phylogenetic interest because of the isolated location of the family Desulfomicrobiaceae within the order Desulfovibrionales. D. baculatum strain X(T) is a Gram-negative, motile, sulfate-reducing bacterium isolated from water-saturated manganese carbonate ore. It is strictly anaerobic and does not require NaCl for growth, although NaCl concentrations up to 6% (w/v) are tolerated. The metabolism is respiratory or fermentative. In the presence of sulfate, pyruvate and lactate are incompletely oxidized to acetate and CO(2). Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the deltaproteobacterial family Desulfomicrobiaceae, and this 3,942,657 bp long single replicon genome with its 3494 protein-coding and 72 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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spelling pubmed-30352152011-02-08 Complete genome sequence of Desulfomicrobium baculatum type strain (X(T)) Copeland, Alex Spring, Stefan Göker, Markus Schneider, Susanne Lapidus, Alla Del Rio, Tijana Glavina Tice, Hope Cheng, Jan-Fang Chen, Feng Nolan, Matt Bruce, David Goodwin, Lynne Pitluck, Sam Ivanova, Natalia Mavrommatis, Konstantinos Ovchinnikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia C. Meincke, Linda Sims, David Brettin, Thomas Detter, John C. Han, Cliff Chain, Patrick Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lucas, Susan Stand Genomic Sci Short Genome Reports Desulfomicrobium baculatum is the type species of the genus Desulfomicrobium, which is the type genus of the family Desulfomicrobiaceae. It is of phylogenetic interest because of the isolated location of the family Desulfomicrobiaceae within the order Desulfovibrionales. D. baculatum strain X(T) is a Gram-negative, motile, sulfate-reducing bacterium isolated from water-saturated manganese carbonate ore. It is strictly anaerobic and does not require NaCl for growth, although NaCl concentrations up to 6% (w/v) are tolerated. The metabolism is respiratory or fermentative. In the presence of sulfate, pyruvate and lactate are incompletely oxidized to acetate and CO(2). Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the deltaproteobacterial family Desulfomicrobiaceae, and this 3,942,657 bp long single replicon genome with its 3494 protein-coding and 72 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2009-07-20 /pmc/articles/PMC3035215/ /pubmed/21304634 http://dx.doi.org/10.4056/sigs.13134 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Copeland, Alex
Spring, Stefan
Göker, Markus
Schneider, Susanne
Lapidus, Alla
Del Rio, Tijana Glavina
Tice, Hope
Cheng, Jan-Fang
Chen, Feng
Nolan, Matt
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Ivanova, Natalia
Mavrommatis, Konstantinos
Ovchinnikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia C.
Meincke, Linda
Sims, David
Brettin, Thomas
Detter, John C.
Han, Cliff
Chain, Patrick
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Lucas, Susan
Complete genome sequence of Desulfomicrobium baculatum type strain (X(T))
title Complete genome sequence of Desulfomicrobium baculatum type strain (X(T))
title_full Complete genome sequence of Desulfomicrobium baculatum type strain (X(T))
title_fullStr Complete genome sequence of Desulfomicrobium baculatum type strain (X(T))
title_full_unstemmed Complete genome sequence of Desulfomicrobium baculatum type strain (X(T))
title_short Complete genome sequence of Desulfomicrobium baculatum type strain (X(T))
title_sort complete genome sequence of desulfomicrobium baculatum type strain (x(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035215/
https://www.ncbi.nlm.nih.gov/pubmed/21304634
http://dx.doi.org/10.4056/sigs.13134
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