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Complete genome sequence of Desulfomicrobium baculatum type strain (X(T))
Desulfomicrobium baculatum is the type species of the genus Desulfomicrobium, which is the type genus of the family Desulfomicrobiaceae. It is of phylogenetic interest because of the isolated location of the family Desulfomicrobiaceae within the order Desulfovibrionales. D. baculatum strain X(T) is...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Michigan State University
2009
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035215/ https://www.ncbi.nlm.nih.gov/pubmed/21304634 http://dx.doi.org/10.4056/sigs.13134 |
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author | Copeland, Alex Spring, Stefan Göker, Markus Schneider, Susanne Lapidus, Alla Del Rio, Tijana Glavina Tice, Hope Cheng, Jan-Fang Chen, Feng Nolan, Matt Bruce, David Goodwin, Lynne Pitluck, Sam Ivanova, Natalia Mavrommatis, Konstantinos Ovchinnikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia C. Meincke, Linda Sims, David Brettin, Thomas Detter, John C. Han, Cliff Chain, Patrick Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lucas, Susan |
author_facet | Copeland, Alex Spring, Stefan Göker, Markus Schneider, Susanne Lapidus, Alla Del Rio, Tijana Glavina Tice, Hope Cheng, Jan-Fang Chen, Feng Nolan, Matt Bruce, David Goodwin, Lynne Pitluck, Sam Ivanova, Natalia Mavrommatis, Konstantinos Ovchinnikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia C. Meincke, Linda Sims, David Brettin, Thomas Detter, John C. Han, Cliff Chain, Patrick Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lucas, Susan |
author_sort | Copeland, Alex |
collection | PubMed |
description | Desulfomicrobium baculatum is the type species of the genus Desulfomicrobium, which is the type genus of the family Desulfomicrobiaceae. It is of phylogenetic interest because of the isolated location of the family Desulfomicrobiaceae within the order Desulfovibrionales. D. baculatum strain X(T) is a Gram-negative, motile, sulfate-reducing bacterium isolated from water-saturated manganese carbonate ore. It is strictly anaerobic and does not require NaCl for growth, although NaCl concentrations up to 6% (w/v) are tolerated. The metabolism is respiratory or fermentative. In the presence of sulfate, pyruvate and lactate are incompletely oxidized to acetate and CO(2). Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the deltaproteobacterial family Desulfomicrobiaceae, and this 3,942,657 bp long single replicon genome with its 3494 protein-coding and 72 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Text |
id | pubmed-3035215 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-30352152011-02-08 Complete genome sequence of Desulfomicrobium baculatum type strain (X(T)) Copeland, Alex Spring, Stefan Göker, Markus Schneider, Susanne Lapidus, Alla Del Rio, Tijana Glavina Tice, Hope Cheng, Jan-Fang Chen, Feng Nolan, Matt Bruce, David Goodwin, Lynne Pitluck, Sam Ivanova, Natalia Mavrommatis, Konstantinos Ovchinnikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia C. Meincke, Linda Sims, David Brettin, Thomas Detter, John C. Han, Cliff Chain, Patrick Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lucas, Susan Stand Genomic Sci Short Genome Reports Desulfomicrobium baculatum is the type species of the genus Desulfomicrobium, which is the type genus of the family Desulfomicrobiaceae. It is of phylogenetic interest because of the isolated location of the family Desulfomicrobiaceae within the order Desulfovibrionales. D. baculatum strain X(T) is a Gram-negative, motile, sulfate-reducing bacterium isolated from water-saturated manganese carbonate ore. It is strictly anaerobic and does not require NaCl for growth, although NaCl concentrations up to 6% (w/v) are tolerated. The metabolism is respiratory or fermentative. In the presence of sulfate, pyruvate and lactate are incompletely oxidized to acetate and CO(2). Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the deltaproteobacterial family Desulfomicrobiaceae, and this 3,942,657 bp long single replicon genome with its 3494 protein-coding and 72 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2009-07-20 /pmc/articles/PMC3035215/ /pubmed/21304634 http://dx.doi.org/10.4056/sigs.13134 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Copeland, Alex Spring, Stefan Göker, Markus Schneider, Susanne Lapidus, Alla Del Rio, Tijana Glavina Tice, Hope Cheng, Jan-Fang Chen, Feng Nolan, Matt Bruce, David Goodwin, Lynne Pitluck, Sam Ivanova, Natalia Mavrommatis, Konstantinos Ovchinnikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia C. Meincke, Linda Sims, David Brettin, Thomas Detter, John C. Han, Cliff Chain, Patrick Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lucas, Susan Complete genome sequence of Desulfomicrobium baculatum type strain (X(T)) |
title | Complete genome sequence of Desulfomicrobium baculatum type strain (X(T)) |
title_full | Complete genome sequence of Desulfomicrobium baculatum type strain (X(T)) |
title_fullStr | Complete genome sequence of Desulfomicrobium baculatum type strain (X(T)) |
title_full_unstemmed | Complete genome sequence of Desulfomicrobium baculatum type strain (X(T)) |
title_short | Complete genome sequence of Desulfomicrobium baculatum type strain (X(T)) |
title_sort | complete genome sequence of desulfomicrobium baculatum type strain (x(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035215/ https://www.ncbi.nlm.nih.gov/pubmed/21304634 http://dx.doi.org/10.4056/sigs.13134 |
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