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Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP(T))

Acidimicrobium ferrooxidans (Clark and Norris 1996) is the sole and type species of the genus, which until recently was the only genus within the actinobacterial family Acidimicrobiaceae and in the order Acidomicrobiales. Rapid oxidation of iron pyrite during autotrophic growth in the absence of an...

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Autores principales: Clum, Alicia, Nolan, Matt, Lang, Elke, Glavina Del Rio, Tijana, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavrommatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Göker, Markus, Spring, Stefan, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia C., Chain, Patrick, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, Lapidus, Alla
Formato: Texto
Lenguaje:English
Publicado: Michigan State University 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035218/
https://www.ncbi.nlm.nih.gov/pubmed/21304635
http://dx.doi.org/10.4056/sigs.1463
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author Clum, Alicia
Nolan, Matt
Lang, Elke
Glavina Del Rio, Tijana
Tice, Hope
Copeland, Alex
Cheng, Jan-Fang
Lucas, Susan
Chen, Feng
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Ivanova, Natalia
Mavrommatis, Konstantinos
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Göker, Markus
Spring, Stefan
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia C.
Chain, Patrick
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Lapidus, Alla
author_facet Clum, Alicia
Nolan, Matt
Lang, Elke
Glavina Del Rio, Tijana
Tice, Hope
Copeland, Alex
Cheng, Jan-Fang
Lucas, Susan
Chen, Feng
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Ivanova, Natalia
Mavrommatis, Konstantinos
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Göker, Markus
Spring, Stefan
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia C.
Chain, Patrick
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Lapidus, Alla
author_sort Clum, Alicia
collection PubMed
description Acidimicrobium ferrooxidans (Clark and Norris 1996) is the sole and type species of the genus, which until recently was the only genus within the actinobacterial family Acidimicrobiaceae and in the order Acidomicrobiales. Rapid oxidation of iron pyrite during autotrophic growth in the absence of an enhanced CO(2) concentration is characteristic for A. ferrooxidans. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the order Acidomicrobiales, and the 2,158,157 bp long single replicon genome with its 2038 protein coding and 54 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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spelling pubmed-30352182011-02-08 Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP(T)) Clum, Alicia Nolan, Matt Lang, Elke Glavina Del Rio, Tijana Tice, Hope Copeland, Alex Cheng, Jan-Fang Lucas, Susan Chen, Feng Bruce, David Goodwin, Lynne Pitluck, Sam Ivanova, Natalia Mavrommatis, Konstantinos Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Göker, Markus Spring, Stefan Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia C. Chain, Patrick Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lapidus, Alla Stand Genomic Sci Short Genome Reports Acidimicrobium ferrooxidans (Clark and Norris 1996) is the sole and type species of the genus, which until recently was the only genus within the actinobacterial family Acidimicrobiaceae and in the order Acidomicrobiales. Rapid oxidation of iron pyrite during autotrophic growth in the absence of an enhanced CO(2) concentration is characteristic for A. ferrooxidans. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the order Acidomicrobiales, and the 2,158,157 bp long single replicon genome with its 2038 protein coding and 54 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2009-07-20 /pmc/articles/PMC3035218/ /pubmed/21304635 http://dx.doi.org/10.4056/sigs.1463 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Clum, Alicia
Nolan, Matt
Lang, Elke
Glavina Del Rio, Tijana
Tice, Hope
Copeland, Alex
Cheng, Jan-Fang
Lucas, Susan
Chen, Feng
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Ivanova, Natalia
Mavrommatis, Konstantinos
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Göker, Markus
Spring, Stefan
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia C.
Chain, Patrick
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Lapidus, Alla
Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP(T))
title Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP(T))
title_full Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP(T))
title_fullStr Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP(T))
title_full_unstemmed Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP(T))
title_short Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP(T))
title_sort complete genome sequence of acidimicrobium ferrooxidans type strain (icp(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035218/
https://www.ncbi.nlm.nih.gov/pubmed/21304635
http://dx.doi.org/10.4056/sigs.1463
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