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Complete genome sequence of Halogeometricum borinquense type strain (PR3(T))
Halogeometricum borinquense Montalvo-Rodríguez et al. 1998 is the type species of the genus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Halosarcina. H. borinquense requires extremely high salt (NaCl) concentrations for growth....
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Michigan State University
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035229/ https://www.ncbi.nlm.nih.gov/pubmed/21304651 http://dx.doi.org/10.4056/sigs.23264 |
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author | Malfatti, Stephanie Tindall, Brian J. Schneider, Susanne Fähnrich, Regine Lapidus, Alla LaButtii, Kurt Copeland, Alex Glavina Del Rio, Tijana Nolan, Matt Chen, Feng Lucas, Susan Tice, Hope Cheng, Jan-Fang Bruce, David Goodwin, Lynne Pitluck, Sam Anderson, Iain Pati, Amrita Ivanova, Natalia Mavromatis, Konstantinos Chen, Amy Palaniappan, Krishna D’haeseleer, Patrik Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Chain, Patrick |
author_facet | Malfatti, Stephanie Tindall, Brian J. Schneider, Susanne Fähnrich, Regine Lapidus, Alla LaButtii, Kurt Copeland, Alex Glavina Del Rio, Tijana Nolan, Matt Chen, Feng Lucas, Susan Tice, Hope Cheng, Jan-Fang Bruce, David Goodwin, Lynne Pitluck, Sam Anderson, Iain Pati, Amrita Ivanova, Natalia Mavromatis, Konstantinos Chen, Amy Palaniappan, Krishna D’haeseleer, Patrik Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Chain, Patrick |
author_sort | Malfatti, Stephanie |
collection | PubMed |
description | Halogeometricum borinquense Montalvo-Rodríguez et al. 1998 is the type species of the genus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Halosarcina. H. borinquense requires extremely high salt (NaCl) concentrations for growth. It can not only grow aerobically but also anaerobically using nitrate as electron acceptor. The strain described in this report is a free-living, motile, pleomorphic, euryarchaeon, which was originally isolated from the solar salterns of Cabo Rojo, Puerto Rico. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the halobacterial genus Halogeometricum, and this 3,944,467 bp long six replicon genome with its 3937 protein-coding and 57 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Text |
id | pubmed-3035229 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-30352292011-02-08 Complete genome sequence of Halogeometricum borinquense type strain (PR3(T)) Malfatti, Stephanie Tindall, Brian J. Schneider, Susanne Fähnrich, Regine Lapidus, Alla LaButtii, Kurt Copeland, Alex Glavina Del Rio, Tijana Nolan, Matt Chen, Feng Lucas, Susan Tice, Hope Cheng, Jan-Fang Bruce, David Goodwin, Lynne Pitluck, Sam Anderson, Iain Pati, Amrita Ivanova, Natalia Mavromatis, Konstantinos Chen, Amy Palaniappan, Krishna D’haeseleer, Patrik Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Chain, Patrick Stand Genomic Sci Short Genome Reports Halogeometricum borinquense Montalvo-Rodríguez et al. 1998 is the type species of the genus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Halosarcina. H. borinquense requires extremely high salt (NaCl) concentrations for growth. It can not only grow aerobically but also anaerobically using nitrate as electron acceptor. The strain described in this report is a free-living, motile, pleomorphic, euryarchaeon, which was originally isolated from the solar salterns of Cabo Rojo, Puerto Rico. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the halobacterial genus Halogeometricum, and this 3,944,467 bp long six replicon genome with its 3937 protein-coding and 57 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2009-09-24 /pmc/articles/PMC3035229/ /pubmed/21304651 http://dx.doi.org/10.4056/sigs.23264 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Malfatti, Stephanie Tindall, Brian J. Schneider, Susanne Fähnrich, Regine Lapidus, Alla LaButtii, Kurt Copeland, Alex Glavina Del Rio, Tijana Nolan, Matt Chen, Feng Lucas, Susan Tice, Hope Cheng, Jan-Fang Bruce, David Goodwin, Lynne Pitluck, Sam Anderson, Iain Pati, Amrita Ivanova, Natalia Mavromatis, Konstantinos Chen, Amy Palaniappan, Krishna D’haeseleer, Patrik Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Chain, Patrick Complete genome sequence of Halogeometricum borinquense type strain (PR3(T)) |
title | Complete genome sequence of Halogeometricum borinquense type strain (PR3(T)) |
title_full | Complete genome sequence of Halogeometricum borinquense type strain (PR3(T)) |
title_fullStr | Complete genome sequence of Halogeometricum borinquense type strain (PR3(T)) |
title_full_unstemmed | Complete genome sequence of Halogeometricum borinquense type strain (PR3(T)) |
title_short | Complete genome sequence of Halogeometricum borinquense type strain (PR3(T)) |
title_sort | complete genome sequence of halogeometricum borinquense type strain (pr3(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035229/ https://www.ncbi.nlm.nih.gov/pubmed/21304651 http://dx.doi.org/10.4056/sigs.23264 |
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