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Complete genome sequence of Saccharomonospora viridis type strain (P101(T))

Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Me...

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Autores principales: Pati, Amrita, Sikorski, Johannes, Nolan, Matt, Lapidus, Alla, Copeland, Alex, Glavina Del Rio, Tijana, Lucas, Susan, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Chertkov, Olga, Brettin, Thomas, Han, Cliff, Detter, John C., Kuske, Cheryl, Bruce, David, Goodwin, Lynne, Chain, Patrick, D'haeseleer, Patrik, Chen, Amy, Palaniappan, Krishna, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Rohde, Manfred, Tindall, Brian J., Göker, Markus, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter
Formato: Texto
Lenguaje:English
Publicado: Michigan State University 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035233/
https://www.ncbi.nlm.nih.gov/pubmed/21304650
http://dx.doi.org/10.4056/sigs.20263
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author Pati, Amrita
Sikorski, Johannes
Nolan, Matt
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Lucas, Susan
Chen, Feng
Tice, Hope
Pitluck, Sam
Cheng, Jan-Fang
Chertkov, Olga
Brettin, Thomas
Han, Cliff
Detter, John C.
Kuske, Cheryl
Bruce, David
Goodwin, Lynne
Chain, Patrick
D'haeseleer, Patrik
Chen, Amy
Palaniappan, Krishna
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Rohde, Manfred
Tindall, Brian J.
Göker, Markus
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
author_facet Pati, Amrita
Sikorski, Johannes
Nolan, Matt
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Lucas, Susan
Chen, Feng
Tice, Hope
Pitluck, Sam
Cheng, Jan-Fang
Chertkov, Olga
Brettin, Thomas
Han, Cliff
Detter, John C.
Kuske, Cheryl
Bruce, David
Goodwin, Lynne
Chain, Patrick
D'haeseleer, Patrik
Chen, Amy
Palaniappan, Krishna
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Rohde, Manfred
Tindall, Brian J.
Göker, Markus
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
author_sort Pati, Amrita
collection PubMed
description Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the species are frequently found in hot compost and hay, and its spores can cause farmer’s lung disease, bagassosis, and humidifier fever. Strains of the species S. viridis have been found to metabolize the xenobiotic pentachlorophenol (PCP). The strain described in this study has been isolated from peat-bog in Ireland. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the family Pseudonocardiaceae, and the 4,308,349 bp long single replicon genome with its 3906 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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spelling pubmed-30352332011-02-08 Complete genome sequence of Saccharomonospora viridis type strain (P101(T)) Pati, Amrita Sikorski, Johannes Nolan, Matt Lapidus, Alla Copeland, Alex Glavina Del Rio, Tijana Lucas, Susan Chen, Feng Tice, Hope Pitluck, Sam Cheng, Jan-Fang Chertkov, Olga Brettin, Thomas Han, Cliff Detter, John C. Kuske, Cheryl Bruce, David Goodwin, Lynne Chain, Patrick D'haeseleer, Patrik Chen, Amy Palaniappan, Krishna Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Rohde, Manfred Tindall, Brian J. Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Stand Genomic Sci Short Genome Reports Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the species are frequently found in hot compost and hay, and its spores can cause farmer’s lung disease, bagassosis, and humidifier fever. Strains of the species S. viridis have been found to metabolize the xenobiotic pentachlorophenol (PCP). The strain described in this study has been isolated from peat-bog in Ireland. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the family Pseudonocardiaceae, and the 4,308,349 bp long single replicon genome with its 3906 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2009-09-24 /pmc/articles/PMC3035233/ /pubmed/21304650 http://dx.doi.org/10.4056/sigs.20263 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Pati, Amrita
Sikorski, Johannes
Nolan, Matt
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Lucas, Susan
Chen, Feng
Tice, Hope
Pitluck, Sam
Cheng, Jan-Fang
Chertkov, Olga
Brettin, Thomas
Han, Cliff
Detter, John C.
Kuske, Cheryl
Bruce, David
Goodwin, Lynne
Chain, Patrick
D'haeseleer, Patrik
Chen, Amy
Palaniappan, Krishna
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Rohde, Manfred
Tindall, Brian J.
Göker, Markus
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Complete genome sequence of Saccharomonospora viridis type strain (P101(T))
title Complete genome sequence of Saccharomonospora viridis type strain (P101(T))
title_full Complete genome sequence of Saccharomonospora viridis type strain (P101(T))
title_fullStr Complete genome sequence of Saccharomonospora viridis type strain (P101(T))
title_full_unstemmed Complete genome sequence of Saccharomonospora viridis type strain (P101(T))
title_short Complete genome sequence of Saccharomonospora viridis type strain (P101(T))
title_sort complete genome sequence of saccharomonospora viridis type strain (p101(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035233/
https://www.ncbi.nlm.nih.gov/pubmed/21304650
http://dx.doi.org/10.4056/sigs.20263
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