Cargando…
Complete genome sequence of Saccharomonospora viridis type strain (P101(T))
Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Me...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2009
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035233/ https://www.ncbi.nlm.nih.gov/pubmed/21304650 http://dx.doi.org/10.4056/sigs.20263 |
_version_ | 1782197742226898944 |
---|---|
author | Pati, Amrita Sikorski, Johannes Nolan, Matt Lapidus, Alla Copeland, Alex Glavina Del Rio, Tijana Lucas, Susan Chen, Feng Tice, Hope Pitluck, Sam Cheng, Jan-Fang Chertkov, Olga Brettin, Thomas Han, Cliff Detter, John C. Kuske, Cheryl Bruce, David Goodwin, Lynne Chain, Patrick D'haeseleer, Patrik Chen, Amy Palaniappan, Krishna Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Rohde, Manfred Tindall, Brian J. Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter |
author_facet | Pati, Amrita Sikorski, Johannes Nolan, Matt Lapidus, Alla Copeland, Alex Glavina Del Rio, Tijana Lucas, Susan Chen, Feng Tice, Hope Pitluck, Sam Cheng, Jan-Fang Chertkov, Olga Brettin, Thomas Han, Cliff Detter, John C. Kuske, Cheryl Bruce, David Goodwin, Lynne Chain, Patrick D'haeseleer, Patrik Chen, Amy Palaniappan, Krishna Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Rohde, Manfred Tindall, Brian J. Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter |
author_sort | Pati, Amrita |
collection | PubMed |
description | Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the species are frequently found in hot compost and hay, and its spores can cause farmer’s lung disease, bagassosis, and humidifier fever. Strains of the species S. viridis have been found to metabolize the xenobiotic pentachlorophenol (PCP). The strain described in this study has been isolated from peat-bog in Ireland. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the family Pseudonocardiaceae, and the 4,308,349 bp long single replicon genome with its 3906 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Text |
id | pubmed-3035233 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-30352332011-02-08 Complete genome sequence of Saccharomonospora viridis type strain (P101(T)) Pati, Amrita Sikorski, Johannes Nolan, Matt Lapidus, Alla Copeland, Alex Glavina Del Rio, Tijana Lucas, Susan Chen, Feng Tice, Hope Pitluck, Sam Cheng, Jan-Fang Chertkov, Olga Brettin, Thomas Han, Cliff Detter, John C. Kuske, Cheryl Bruce, David Goodwin, Lynne Chain, Patrick D'haeseleer, Patrik Chen, Amy Palaniappan, Krishna Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Rohde, Manfred Tindall, Brian J. Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Stand Genomic Sci Short Genome Reports Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the species are frequently found in hot compost and hay, and its spores can cause farmer’s lung disease, bagassosis, and humidifier fever. Strains of the species S. viridis have been found to metabolize the xenobiotic pentachlorophenol (PCP). The strain described in this study has been isolated from peat-bog in Ireland. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the family Pseudonocardiaceae, and the 4,308,349 bp long single replicon genome with its 3906 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2009-09-24 /pmc/articles/PMC3035233/ /pubmed/21304650 http://dx.doi.org/10.4056/sigs.20263 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Pati, Amrita Sikorski, Johannes Nolan, Matt Lapidus, Alla Copeland, Alex Glavina Del Rio, Tijana Lucas, Susan Chen, Feng Tice, Hope Pitluck, Sam Cheng, Jan-Fang Chertkov, Olga Brettin, Thomas Han, Cliff Detter, John C. Kuske, Cheryl Bruce, David Goodwin, Lynne Chain, Patrick D'haeseleer, Patrik Chen, Amy Palaniappan, Krishna Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Rohde, Manfred Tindall, Brian J. Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Complete genome sequence of Saccharomonospora viridis type strain (P101(T)) |
title | Complete genome sequence of Saccharomonospora viridis type strain (P101(T)) |
title_full | Complete genome sequence of Saccharomonospora viridis type strain (P101(T)) |
title_fullStr | Complete genome sequence of Saccharomonospora viridis type strain (P101(T)) |
title_full_unstemmed | Complete genome sequence of Saccharomonospora viridis type strain (P101(T)) |
title_short | Complete genome sequence of Saccharomonospora viridis type strain (P101(T)) |
title_sort | complete genome sequence of saccharomonospora viridis type strain (p101(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035233/ https://www.ncbi.nlm.nih.gov/pubmed/21304650 http://dx.doi.org/10.4056/sigs.20263 |
work_keys_str_mv | AT patiamrita completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT sikorskijohannes completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT nolanmatt completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT lapidusalla completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT copelandalex completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT glavinadelriotijana completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT lucassusan completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT chenfeng completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT ticehope completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT pitlucksam completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT chengjanfang completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT chertkovolga completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT brettinthomas completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT hancliff completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT detterjohnc completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT kuskecheryl completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT brucedavid completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT goodwinlynne completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT chainpatrick completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT dhaeseleerpatrik completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT chenamy completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT palaniappankrishna completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT ivanovanatalia completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT mavromatiskonstantinos completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT mikhailovanatalia completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT rohdemanfred completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT tindallbrianj completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT gokermarkus completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT bristowjim completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT eisenjonathana completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT markowitzvictor completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT hugenholtzphilip completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT kyrpidesnikosc completegenomesequenceofsaccharomonosporaviridistypestrainp101t AT klenkhanspeter completegenomesequenceofsaccharomonosporaviridistypestrainp101t |