Cargando…
Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T))
Halomicrobium mukohataei (Ihara et al. 1997) Oren et al. 2002 is the type species of the genus Halomicrobium. It is of phylogenetic interest because of its isolated location within the large euryarchaeal family Halobacteriaceae. H. mukohataei is an extreme halophile that grows essentially aerobicall...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2009
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035239/ https://www.ncbi.nlm.nih.gov/pubmed/21304667 http://dx.doi.org/10.4056/sigs.42644 |
_version_ | 1782197743671836672 |
---|---|
author | Tindall, Brian J. Schneider, Susanne Lapidus, Alla Copeland, Alex Glavina Del Rio, Tijana Nolan, Matt Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Saunders, Elizabeth Bruce, David Goodwin, Lynne Pitluck, Sam Mikhailova, Natalia Pati, Amrita Ivanova, Natalia Mavrommatis, Konstantinos Chen, Amy Palaniappan, Krishna Chain, Patrick Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Brettin, Thomas Han, Cliff Rohde, Manfred Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Detter, John C. |
author_facet | Tindall, Brian J. Schneider, Susanne Lapidus, Alla Copeland, Alex Glavina Del Rio, Tijana Nolan, Matt Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Saunders, Elizabeth Bruce, David Goodwin, Lynne Pitluck, Sam Mikhailova, Natalia Pati, Amrita Ivanova, Natalia Mavrommatis, Konstantinos Chen, Amy Palaniappan, Krishna Chain, Patrick Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Brettin, Thomas Han, Cliff Rohde, Manfred Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Detter, John C. |
author_sort | Tindall, Brian J. |
collection | PubMed |
description | Halomicrobium mukohataei (Ihara et al. 1997) Oren et al. 2002 is the type species of the genus Halomicrobium. It is of phylogenetic interest because of its isolated location within the large euryarchaeal family Halobacteriaceae. H. mukohataei is an extreme halophile that grows essentially aerobically, but can also grow anaerobically under a change of morphology and with nitrate as electron acceptor. The strain, whose genome is described in this report, is a free-living, motile, Gram-negative euryarchaeon, originally isolated from Salinas Grandes in Jujuy, Andes highlands, Argentina. Its genome contains three genes for the 16S rRNA that differ from each other by up to 9%. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence from the poorly populated genus Halomicrobium, and the 3,332,349 bp long genome (chromosome and one plasmid) with its 3416 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Text |
id | pubmed-3035239 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-30352392011-02-08 Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T)) Tindall, Brian J. Schneider, Susanne Lapidus, Alla Copeland, Alex Glavina Del Rio, Tijana Nolan, Matt Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Saunders, Elizabeth Bruce, David Goodwin, Lynne Pitluck, Sam Mikhailova, Natalia Pati, Amrita Ivanova, Natalia Mavrommatis, Konstantinos Chen, Amy Palaniappan, Krishna Chain, Patrick Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Brettin, Thomas Han, Cliff Rohde, Manfred Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Detter, John C. Stand Genomic Sci Short Genome Reports Halomicrobium mukohataei (Ihara et al. 1997) Oren et al. 2002 is the type species of the genus Halomicrobium. It is of phylogenetic interest because of its isolated location within the large euryarchaeal family Halobacteriaceae. H. mukohataei is an extreme halophile that grows essentially aerobically, but can also grow anaerobically under a change of morphology and with nitrate as electron acceptor. The strain, whose genome is described in this report, is a free-living, motile, Gram-negative euryarchaeon, originally isolated from Salinas Grandes in Jujuy, Andes highlands, Argentina. Its genome contains three genes for the 16S rRNA that differ from each other by up to 9%. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence from the poorly populated genus Halomicrobium, and the 3,332,349 bp long genome (chromosome and one plasmid) with its 3416 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2009-11-22 /pmc/articles/PMC3035239/ /pubmed/21304667 http://dx.doi.org/10.4056/sigs.42644 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Tindall, Brian J. Schneider, Susanne Lapidus, Alla Copeland, Alex Glavina Del Rio, Tijana Nolan, Matt Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Saunders, Elizabeth Bruce, David Goodwin, Lynne Pitluck, Sam Mikhailova, Natalia Pati, Amrita Ivanova, Natalia Mavrommatis, Konstantinos Chen, Amy Palaniappan, Krishna Chain, Patrick Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Brettin, Thomas Han, Cliff Rohde, Manfred Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Detter, John C. Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T)) |
title | Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T)) |
title_full | Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T)) |
title_fullStr | Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T)) |
title_full_unstemmed | Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T)) |
title_short | Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T)) |
title_sort | complete genome sequence of halomicrobium mukohataei type strain (arg-2(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035239/ https://www.ncbi.nlm.nih.gov/pubmed/21304667 http://dx.doi.org/10.4056/sigs.42644 |
work_keys_str_mv | AT tindallbrianj completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT schneidersusanne completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT lapidusalla completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT copelandalex completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT glavinadelriotijana completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT nolanmatt completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT lucassusan completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT chenfeng completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT ticehope completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT chengjanfang completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT saunderselizabeth completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT brucedavid completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT goodwinlynne completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT pitlucksam completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT mikhailovanatalia completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT patiamrita completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT ivanovanatalia completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT mavrommatiskonstantinos completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT chenamy completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT palaniappankrishna completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT chainpatrick completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT landmiriam completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT hauserloren completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT changyunjuan completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT jeffriescynthiad completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT brettinthomas completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT hancliff completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT rohdemanfred completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT gokermarkus completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT bristowjim completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT eisenjonathana completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT markowitzvictor completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT hugenholtzphilip completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT klenkhanspeter completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT kyrpidesnikosc completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t AT detterjohnc completegenomesequenceofhalomicrobiummukohataeitypestrainarg2t |