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Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T))

Halomicrobium mukohataei (Ihara et al. 1997) Oren et al. 2002 is the type species of the genus Halomicrobium. It is of phylogenetic interest because of its isolated location within the large euryarchaeal family Halobacteriaceae. H. mukohataei is an extreme halophile that grows essentially aerobicall...

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Autores principales: Tindall, Brian J., Schneider, Susanne, Lapidus, Alla, Copeland, Alex, Glavina Del Rio, Tijana, Nolan, Matt, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Saunders, Elizabeth, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Mikhailova, Natalia, Pati, Amrita, Ivanova, Natalia, Mavrommatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Han, Cliff, Rohde, Manfred, Göker, Markus, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Klenk, Hans-Peter, Kyrpides, Nikos C., Detter, John C.
Formato: Texto
Lenguaje:English
Publicado: Michigan State University 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035239/
https://www.ncbi.nlm.nih.gov/pubmed/21304667
http://dx.doi.org/10.4056/sigs.42644
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author Tindall, Brian J.
Schneider, Susanne
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Nolan, Matt
Lucas, Susan
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Saunders, Elizabeth
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Mikhailova, Natalia
Pati, Amrita
Ivanova, Natalia
Mavrommatis, Konstantinos
Chen, Amy
Palaniappan, Krishna
Chain, Patrick
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Brettin, Thomas
Han, Cliff
Rohde, Manfred
Göker, Markus
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
Detter, John C.
author_facet Tindall, Brian J.
Schneider, Susanne
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Nolan, Matt
Lucas, Susan
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Saunders, Elizabeth
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Mikhailova, Natalia
Pati, Amrita
Ivanova, Natalia
Mavrommatis, Konstantinos
Chen, Amy
Palaniappan, Krishna
Chain, Patrick
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Brettin, Thomas
Han, Cliff
Rohde, Manfred
Göker, Markus
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
Detter, John C.
author_sort Tindall, Brian J.
collection PubMed
description Halomicrobium mukohataei (Ihara et al. 1997) Oren et al. 2002 is the type species of the genus Halomicrobium. It is of phylogenetic interest because of its isolated location within the large euryarchaeal family Halobacteriaceae. H. mukohataei is an extreme halophile that grows essentially aerobically, but can also grow anaerobically under a change of morphology and with nitrate as electron acceptor. The strain, whose genome is described in this report, is a free-living, motile, Gram-negative euryarchaeon, originally isolated from Salinas Grandes in Jujuy, Andes highlands, Argentina. Its genome contains three genes for the 16S rRNA that differ from each other by up to 9%. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence from the poorly populated genus Halomicrobium, and the 3,332,349 bp long genome (chromosome and one plasmid) with its 3416 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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spelling pubmed-30352392011-02-08 Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T)) Tindall, Brian J. Schneider, Susanne Lapidus, Alla Copeland, Alex Glavina Del Rio, Tijana Nolan, Matt Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Saunders, Elizabeth Bruce, David Goodwin, Lynne Pitluck, Sam Mikhailova, Natalia Pati, Amrita Ivanova, Natalia Mavrommatis, Konstantinos Chen, Amy Palaniappan, Krishna Chain, Patrick Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Brettin, Thomas Han, Cliff Rohde, Manfred Göker, Markus Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Detter, John C. Stand Genomic Sci Short Genome Reports Halomicrobium mukohataei (Ihara et al. 1997) Oren et al. 2002 is the type species of the genus Halomicrobium. It is of phylogenetic interest because of its isolated location within the large euryarchaeal family Halobacteriaceae. H. mukohataei is an extreme halophile that grows essentially aerobically, but can also grow anaerobically under a change of morphology and with nitrate as electron acceptor. The strain, whose genome is described in this report, is a free-living, motile, Gram-negative euryarchaeon, originally isolated from Salinas Grandes in Jujuy, Andes highlands, Argentina. Its genome contains three genes for the 16S rRNA that differ from each other by up to 9%. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence from the poorly populated genus Halomicrobium, and the 3,332,349 bp long genome (chromosome and one plasmid) with its 3416 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2009-11-22 /pmc/articles/PMC3035239/ /pubmed/21304667 http://dx.doi.org/10.4056/sigs.42644 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Tindall, Brian J.
Schneider, Susanne
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Nolan, Matt
Lucas, Susan
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Saunders, Elizabeth
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Mikhailova, Natalia
Pati, Amrita
Ivanova, Natalia
Mavrommatis, Konstantinos
Chen, Amy
Palaniappan, Krishna
Chain, Patrick
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Brettin, Thomas
Han, Cliff
Rohde, Manfred
Göker, Markus
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
Detter, John C.
Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T))
title Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T))
title_full Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T))
title_fullStr Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T))
title_full_unstemmed Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T))
title_short Complete genome sequence of Halomicrobium mukohataei type strain (arg-2(T))
title_sort complete genome sequence of halomicrobium mukohataei type strain (arg-2(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035239/
https://www.ncbi.nlm.nih.gov/pubmed/21304667
http://dx.doi.org/10.4056/sigs.42644
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