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Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T))

Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-ne...

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Autores principales: Anderson, Iain, Tindall, Brian J., Pomrenke, Helga, Göker, Markus, Lapidus, Alla, Nolan, Matt, Copeland, Alex, Glavina Del Rio, Tijana, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chertkov, Olga, Bruce, David, Brettin, Thomas, Detter, John C., Han, Cliff, Goodwin, Lynne, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Pitluck, Sam, Pati, Amrita, Mavromatis, Konstantinos, Ivanova, Natalia, Ovchinnikova, Galina, Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Rohde, Manfred, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter
Formato: Texto
Lenguaje:English
Publicado: Michigan State University 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035240/
https://www.ncbi.nlm.nih.gov/pubmed/21304660
http://dx.doi.org/10.4056/sigs.31864
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author Anderson, Iain
Tindall, Brian J.
Pomrenke, Helga
Göker, Markus
Lapidus, Alla
Nolan, Matt
Copeland, Alex
Glavina Del Rio, Tijana
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Lucas, Susan
Chertkov, Olga
Bruce, David
Brettin, Thomas
Detter, John C.
Han, Cliff
Goodwin, Lynne
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Pitluck, Sam
Pati, Amrita
Mavromatis, Konstantinos
Ivanova, Natalia
Ovchinnikova, Galina
Chen, Amy
Palaniappan, Krishna
Chain, Patrick
Rohde, Manfred
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
author_facet Anderson, Iain
Tindall, Brian J.
Pomrenke, Helga
Göker, Markus
Lapidus, Alla
Nolan, Matt
Copeland, Alex
Glavina Del Rio, Tijana
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Lucas, Susan
Chertkov, Olga
Bruce, David
Brettin, Thomas
Detter, John C.
Han, Cliff
Goodwin, Lynne
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Pitluck, Sam
Pati, Amrita
Mavromatis, Konstantinos
Ivanova, Natalia
Ovchinnikova, Galina
Chen, Amy
Palaniappan, Krishna
Chain, Patrick
Rohde, Manfred
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
author_sort Anderson, Iain
collection PubMed
description Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-negative archaeon, which was originally isolated from a sediment sample collected from the southern arm of Great Salt Lake, Utah, USA. When grown on appropriate media, H. utahensis can form polyhydroxybutyrate (PHB). Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the a member of halobacterial genus Halorhabdus, and the 3,116,795 bp long single replicon genome with its 3027 protein-coding and 48 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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spelling pubmed-30352402011-02-08 Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T)) Anderson, Iain Tindall, Brian J. Pomrenke, Helga Göker, Markus Lapidus, Alla Nolan, Matt Copeland, Alex Glavina Del Rio, Tijana Chen, Feng Tice, Hope Cheng, Jan-Fang Lucas, Susan Chertkov, Olga Bruce, David Brettin, Thomas Detter, John C. Han, Cliff Goodwin, Lynne Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Pitluck, Sam Pati, Amrita Mavromatis, Konstantinos Ivanova, Natalia Ovchinnikova, Galina Chen, Amy Palaniappan, Krishna Chain, Patrick Rohde, Manfred Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Stand Genomic Sci Short Genome Reports Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-negative archaeon, which was originally isolated from a sediment sample collected from the southern arm of Great Salt Lake, Utah, USA. When grown on appropriate media, H. utahensis can form polyhydroxybutyrate (PHB). Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the a member of halobacterial genus Halorhabdus, and the 3,116,795 bp long single replicon genome with its 3027 protein-coding and 48 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2009-11-22 /pmc/articles/PMC3035240/ /pubmed/21304660 http://dx.doi.org/10.4056/sigs.31864 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Anderson, Iain
Tindall, Brian J.
Pomrenke, Helga
Göker, Markus
Lapidus, Alla
Nolan, Matt
Copeland, Alex
Glavina Del Rio, Tijana
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Lucas, Susan
Chertkov, Olga
Bruce, David
Brettin, Thomas
Detter, John C.
Han, Cliff
Goodwin, Lynne
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Pitluck, Sam
Pati, Amrita
Mavromatis, Konstantinos
Ivanova, Natalia
Ovchinnikova, Galina
Chen, Amy
Palaniappan, Krishna
Chain, Patrick
Rohde, Manfred
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T))
title Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T))
title_full Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T))
title_fullStr Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T))
title_full_unstemmed Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T))
title_short Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T))
title_sort complete genome sequence of halorhabdus utahensis type strain (ax-2(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035240/
https://www.ncbi.nlm.nih.gov/pubmed/21304660
http://dx.doi.org/10.4056/sigs.31864
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