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Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T))
Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-ne...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Michigan State University
2009
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035240/ https://www.ncbi.nlm.nih.gov/pubmed/21304660 http://dx.doi.org/10.4056/sigs.31864 |
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author | Anderson, Iain Tindall, Brian J. Pomrenke, Helga Göker, Markus Lapidus, Alla Nolan, Matt Copeland, Alex Glavina Del Rio, Tijana Chen, Feng Tice, Hope Cheng, Jan-Fang Lucas, Susan Chertkov, Olga Bruce, David Brettin, Thomas Detter, John C. Han, Cliff Goodwin, Lynne Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Pitluck, Sam Pati, Amrita Mavromatis, Konstantinos Ivanova, Natalia Ovchinnikova, Galina Chen, Amy Palaniappan, Krishna Chain, Patrick Rohde, Manfred Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter |
author_facet | Anderson, Iain Tindall, Brian J. Pomrenke, Helga Göker, Markus Lapidus, Alla Nolan, Matt Copeland, Alex Glavina Del Rio, Tijana Chen, Feng Tice, Hope Cheng, Jan-Fang Lucas, Susan Chertkov, Olga Bruce, David Brettin, Thomas Detter, John C. Han, Cliff Goodwin, Lynne Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Pitluck, Sam Pati, Amrita Mavromatis, Konstantinos Ivanova, Natalia Ovchinnikova, Galina Chen, Amy Palaniappan, Krishna Chain, Patrick Rohde, Manfred Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter |
author_sort | Anderson, Iain |
collection | PubMed |
description | Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-negative archaeon, which was originally isolated from a sediment sample collected from the southern arm of Great Salt Lake, Utah, USA. When grown on appropriate media, H. utahensis can form polyhydroxybutyrate (PHB). Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the a member of halobacterial genus Halorhabdus, and the 3,116,795 bp long single replicon genome with its 3027 protein-coding and 48 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Text |
id | pubmed-3035240 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-30352402011-02-08 Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T)) Anderson, Iain Tindall, Brian J. Pomrenke, Helga Göker, Markus Lapidus, Alla Nolan, Matt Copeland, Alex Glavina Del Rio, Tijana Chen, Feng Tice, Hope Cheng, Jan-Fang Lucas, Susan Chertkov, Olga Bruce, David Brettin, Thomas Detter, John C. Han, Cliff Goodwin, Lynne Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Pitluck, Sam Pati, Amrita Mavromatis, Konstantinos Ivanova, Natalia Ovchinnikova, Galina Chen, Amy Palaniappan, Krishna Chain, Patrick Rohde, Manfred Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Stand Genomic Sci Short Genome Reports Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-negative archaeon, which was originally isolated from a sediment sample collected from the southern arm of Great Salt Lake, Utah, USA. When grown on appropriate media, H. utahensis can form polyhydroxybutyrate (PHB). Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the a member of halobacterial genus Halorhabdus, and the 3,116,795 bp long single replicon genome with its 3027 protein-coding and 48 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2009-11-22 /pmc/articles/PMC3035240/ /pubmed/21304660 http://dx.doi.org/10.4056/sigs.31864 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Anderson, Iain Tindall, Brian J. Pomrenke, Helga Göker, Markus Lapidus, Alla Nolan, Matt Copeland, Alex Glavina Del Rio, Tijana Chen, Feng Tice, Hope Cheng, Jan-Fang Lucas, Susan Chertkov, Olga Bruce, David Brettin, Thomas Detter, John C. Han, Cliff Goodwin, Lynne Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Pitluck, Sam Pati, Amrita Mavromatis, Konstantinos Ivanova, Natalia Ovchinnikova, Galina Chen, Amy Palaniappan, Krishna Chain, Patrick Rohde, Manfred Bristow, Jim Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T)) |
title | Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T)) |
title_full | Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T)) |
title_fullStr | Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T)) |
title_full_unstemmed | Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T)) |
title_short | Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T)) |
title_sort | complete genome sequence of halorhabdus utahensis type strain (ax-2(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035240/ https://www.ncbi.nlm.nih.gov/pubmed/21304660 http://dx.doi.org/10.4056/sigs.31864 |
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