Cargando…

Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T))

Slackia heliotrinireducens (Lanigan 1983) Wade et al. 1999 is of phylogenetic interest because of its location in a genomically yet uncharted section of the family Coriobacteriaceae, within the deep branching Actinobacteria. Strain RHS 1(T) was originally isolated from the ruminal flora of a sheep....

Descripción completa

Detalles Bibliográficos
Autores principales: Pukall, Rüdiger, Lapidus, Alla, Nolan, Matt, Copeland, Alex, Glavina Del Rio, Tijana, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Chertkov, Olga, Bruce, David, Goodwin, Lynne, Kuske, Cheryl, Brettin, Thomas, Detter, John C., Han, Cliff, Pitluck, Sam, Pati, Amrita, Mavrommatis, Konstantinos, Ivanova, Natalia, Ovchinnikova, Galina, Chen, Amy, Palaniappan, Krishna, Schneider, Susanne, Rohde, Manfred, Chain, Patrick, D'haeseleer, Patrik, Göker, Markus, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Kyrpides, Nikos C., Klenk, Hans-Peter, Hugenholtz, Philip
Formato: Texto
Lenguaje:English
Publicado: Michigan State University 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035243/
https://www.ncbi.nlm.nih.gov/pubmed/21304663
http://dx.doi.org/10.4056/sigs.37633
_version_ 1782197744607166464
author Pukall, Rüdiger
Lapidus, Alla
Nolan, Matt
Copeland, Alex
Glavina Del Rio, Tijana
Lucas, Susan
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Chertkov, Olga
Bruce, David
Goodwin, Lynne
Kuske, Cheryl
Brettin, Thomas
Detter, John C.
Han, Cliff
Pitluck, Sam
Pati, Amrita
Mavrommatis, Konstantinos
Ivanova, Natalia
Ovchinnikova, Galina
Chen, Amy
Palaniappan, Krishna
Schneider, Susanne
Rohde, Manfred
Chain, Patrick
D'haeseleer, Patrik
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Kyrpides, Nikos C.
Klenk, Hans-Peter
Hugenholtz, Philip
author_facet Pukall, Rüdiger
Lapidus, Alla
Nolan, Matt
Copeland, Alex
Glavina Del Rio, Tijana
Lucas, Susan
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Chertkov, Olga
Bruce, David
Goodwin, Lynne
Kuske, Cheryl
Brettin, Thomas
Detter, John C.
Han, Cliff
Pitluck, Sam
Pati, Amrita
Mavrommatis, Konstantinos
Ivanova, Natalia
Ovchinnikova, Galina
Chen, Amy
Palaniappan, Krishna
Schneider, Susanne
Rohde, Manfred
Chain, Patrick
D'haeseleer, Patrik
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Kyrpides, Nikos C.
Klenk, Hans-Peter
Hugenholtz, Philip
author_sort Pukall, Rüdiger
collection PubMed
description Slackia heliotrinireducens (Lanigan 1983) Wade et al. 1999 is of phylogenetic interest because of its location in a genomically yet uncharted section of the family Coriobacteriaceae, within the deep branching Actinobacteria. Strain RHS 1(T) was originally isolated from the ruminal flora of a sheep. It is a proteolytic anaerobic coccus, able to reductively cleave pyrrolizidine alkaloids. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Slackia, and the 3,165,038 bp long single replicon genome with its 2798 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
format Text
id pubmed-3035243
institution National Center for Biotechnology Information
language English
publishDate 2009
publisher Michigan State University
record_format MEDLINE/PubMed
spelling pubmed-30352432011-02-08 Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T)) Pukall, Rüdiger Lapidus, Alla Nolan, Matt Copeland, Alex Glavina Del Rio, Tijana Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Chertkov, Olga Bruce, David Goodwin, Lynne Kuske, Cheryl Brettin, Thomas Detter, John C. Han, Cliff Pitluck, Sam Pati, Amrita Mavrommatis, Konstantinos Ivanova, Natalia Ovchinnikova, Galina Chen, Amy Palaniappan, Krishna Schneider, Susanne Rohde, Manfred Chain, Patrick D'haeseleer, Patrik Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Kyrpides, Nikos C. Klenk, Hans-Peter Hugenholtz, Philip Stand Genomic Sci Short Genome Reports Slackia heliotrinireducens (Lanigan 1983) Wade et al. 1999 is of phylogenetic interest because of its location in a genomically yet uncharted section of the family Coriobacteriaceae, within the deep branching Actinobacteria. Strain RHS 1(T) was originally isolated from the ruminal flora of a sheep. It is a proteolytic anaerobic coccus, able to reductively cleave pyrrolizidine alkaloids. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Slackia, and the 3,165,038 bp long single replicon genome with its 2798 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2009-11-22 /pmc/articles/PMC3035243/ /pubmed/21304663 http://dx.doi.org/10.4056/sigs.37633 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Pukall, Rüdiger
Lapidus, Alla
Nolan, Matt
Copeland, Alex
Glavina Del Rio, Tijana
Lucas, Susan
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Chertkov, Olga
Bruce, David
Goodwin, Lynne
Kuske, Cheryl
Brettin, Thomas
Detter, John C.
Han, Cliff
Pitluck, Sam
Pati, Amrita
Mavrommatis, Konstantinos
Ivanova, Natalia
Ovchinnikova, Galina
Chen, Amy
Palaniappan, Krishna
Schneider, Susanne
Rohde, Manfred
Chain, Patrick
D'haeseleer, Patrik
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Kyrpides, Nikos C.
Klenk, Hans-Peter
Hugenholtz, Philip
Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T))
title Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T))
title_full Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T))
title_fullStr Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T))
title_full_unstemmed Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T))
title_short Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T))
title_sort complete genome sequence of slackia heliotrinireducens type strain (rhs 1(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035243/
https://www.ncbi.nlm.nih.gov/pubmed/21304663
http://dx.doi.org/10.4056/sigs.37633
work_keys_str_mv AT pukallrudiger completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT lapidusalla completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT nolanmatt completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT copelandalex completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT glavinadelriotijana completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT lucassusan completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT chenfeng completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT ticehope completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT chengjanfang completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT chertkovolga completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT brucedavid completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT goodwinlynne completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT kuskecheryl completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT brettinthomas completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT detterjohnc completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT hancliff completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT pitlucksam completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT patiamrita completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT mavrommatiskonstantinos completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT ivanovanatalia completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT ovchinnikovagalina completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT chenamy completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT palaniappankrishna completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT schneidersusanne completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT rohdemanfred completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT chainpatrick completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT dhaeseleerpatrik completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT gokermarkus completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT bristowjames completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT eisenjonathana completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT markowitzvictor completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT kyrpidesnikosc completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT klenkhanspeter completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t
AT hugenholtzphilip completegenomesequenceofslackiaheliotrinireducenstypestrainrhs1t