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Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T))
Slackia heliotrinireducens (Lanigan 1983) Wade et al. 1999 is of phylogenetic interest because of its location in a genomically yet uncharted section of the family Coriobacteriaceae, within the deep branching Actinobacteria. Strain RHS 1(T) was originally isolated from the ruminal flora of a sheep....
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Michigan State University
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035243/ https://www.ncbi.nlm.nih.gov/pubmed/21304663 http://dx.doi.org/10.4056/sigs.37633 |
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author | Pukall, Rüdiger Lapidus, Alla Nolan, Matt Copeland, Alex Glavina Del Rio, Tijana Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Chertkov, Olga Bruce, David Goodwin, Lynne Kuske, Cheryl Brettin, Thomas Detter, John C. Han, Cliff Pitluck, Sam Pati, Amrita Mavrommatis, Konstantinos Ivanova, Natalia Ovchinnikova, Galina Chen, Amy Palaniappan, Krishna Schneider, Susanne Rohde, Manfred Chain, Patrick D'haeseleer, Patrik Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Kyrpides, Nikos C. Klenk, Hans-Peter Hugenholtz, Philip |
author_facet | Pukall, Rüdiger Lapidus, Alla Nolan, Matt Copeland, Alex Glavina Del Rio, Tijana Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Chertkov, Olga Bruce, David Goodwin, Lynne Kuske, Cheryl Brettin, Thomas Detter, John C. Han, Cliff Pitluck, Sam Pati, Amrita Mavrommatis, Konstantinos Ivanova, Natalia Ovchinnikova, Galina Chen, Amy Palaniappan, Krishna Schneider, Susanne Rohde, Manfred Chain, Patrick D'haeseleer, Patrik Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Kyrpides, Nikos C. Klenk, Hans-Peter Hugenholtz, Philip |
author_sort | Pukall, Rüdiger |
collection | PubMed |
description | Slackia heliotrinireducens (Lanigan 1983) Wade et al. 1999 is of phylogenetic interest because of its location in a genomically yet uncharted section of the family Coriobacteriaceae, within the deep branching Actinobacteria. Strain RHS 1(T) was originally isolated from the ruminal flora of a sheep. It is a proteolytic anaerobic coccus, able to reductively cleave pyrrolizidine alkaloids. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Slackia, and the 3,165,038 bp long single replicon genome with its 2798 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Text |
id | pubmed-3035243 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-30352432011-02-08 Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T)) Pukall, Rüdiger Lapidus, Alla Nolan, Matt Copeland, Alex Glavina Del Rio, Tijana Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Chertkov, Olga Bruce, David Goodwin, Lynne Kuske, Cheryl Brettin, Thomas Detter, John C. Han, Cliff Pitluck, Sam Pati, Amrita Mavrommatis, Konstantinos Ivanova, Natalia Ovchinnikova, Galina Chen, Amy Palaniappan, Krishna Schneider, Susanne Rohde, Manfred Chain, Patrick D'haeseleer, Patrik Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Kyrpides, Nikos C. Klenk, Hans-Peter Hugenholtz, Philip Stand Genomic Sci Short Genome Reports Slackia heliotrinireducens (Lanigan 1983) Wade et al. 1999 is of phylogenetic interest because of its location in a genomically yet uncharted section of the family Coriobacteriaceae, within the deep branching Actinobacteria. Strain RHS 1(T) was originally isolated from the ruminal flora of a sheep. It is a proteolytic anaerobic coccus, able to reductively cleave pyrrolizidine alkaloids. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Slackia, and the 3,165,038 bp long single replicon genome with its 2798 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2009-11-22 /pmc/articles/PMC3035243/ /pubmed/21304663 http://dx.doi.org/10.4056/sigs.37633 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Pukall, Rüdiger Lapidus, Alla Nolan, Matt Copeland, Alex Glavina Del Rio, Tijana Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Chertkov, Olga Bruce, David Goodwin, Lynne Kuske, Cheryl Brettin, Thomas Detter, John C. Han, Cliff Pitluck, Sam Pati, Amrita Mavrommatis, Konstantinos Ivanova, Natalia Ovchinnikova, Galina Chen, Amy Palaniappan, Krishna Schneider, Susanne Rohde, Manfred Chain, Patrick D'haeseleer, Patrik Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Kyrpides, Nikos C. Klenk, Hans-Peter Hugenholtz, Philip Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T)) |
title | Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T)) |
title_full | Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T)) |
title_fullStr | Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T)) |
title_full_unstemmed | Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T)) |
title_short | Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1(T)) |
title_sort | complete genome sequence of slackia heliotrinireducens type strain (rhs 1(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035243/ https://www.ncbi.nlm.nih.gov/pubmed/21304663 http://dx.doi.org/10.4056/sigs.37633 |
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