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Complete genome sequence of Haloterrigena turkmenica type strain (4k(T))
Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Michigan State University
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035258/ https://www.ncbi.nlm.nih.gov/pubmed/21304683 http://dx.doi.org/10.4056/sigs.681272 |
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author | Saunders, Elisabeth Tindall, Brian J. Fähnrich, Regine Lapidus, Alla Copeland, Alex Del Rio, Tijana Glavina Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Han, Cliff Detter, John C. Bruce, David Goodwin, Lynne Chain, Patrick Pitluck, Sam Pati, Amrita Ivanova, Natalia Mavromatis, Konstantinos Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Brettin, Thomas Rohde, Manfred Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. |
author_facet | Saunders, Elisabeth Tindall, Brian J. Fähnrich, Regine Lapidus, Alla Copeland, Alex Del Rio, Tijana Glavina Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Han, Cliff Detter, John C. Bruce, David Goodwin, Lynne Chain, Patrick Pitluck, Sam Pati, Amrita Ivanova, Natalia Mavromatis, Konstantinos Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Brettin, Thomas Rohde, Manfred Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. |
author_sort | Saunders, Elisabeth |
collection | PubMed |
description | Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the Halobacteriaceae, which created some taxonomic problems historically. H. turkmenica, was isolated from sulfate saline soil in Turkmenistan, is a relatively fast growing, chemoorganotrophic, carotenoid-containing, extreme halophile, requiring at least 2 M NaCl for growth. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Haloterrigena, but the eighth genome sequence from a member of the family Halobacteriaceae. The 5,440,782 bp genome (including six plasmids) with its 5,287 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Text |
id | pubmed-3035258 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-30352582011-02-08 Complete genome sequence of Haloterrigena turkmenica type strain (4k(T)) Saunders, Elisabeth Tindall, Brian J. Fähnrich, Regine Lapidus, Alla Copeland, Alex Del Rio, Tijana Glavina Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Han, Cliff Detter, John C. Bruce, David Goodwin, Lynne Chain, Patrick Pitluck, Sam Pati, Amrita Ivanova, Natalia Mavromatis, Konstantinos Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Brettin, Thomas Rohde, Manfred Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Stand Genomic Sci Short Genome Reports Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the Halobacteriaceae, which created some taxonomic problems historically. H. turkmenica, was isolated from sulfate saline soil in Turkmenistan, is a relatively fast growing, chemoorganotrophic, carotenoid-containing, extreme halophile, requiring at least 2 M NaCl for growth. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Haloterrigena, but the eighth genome sequence from a member of the family Halobacteriaceae. The 5,440,782 bp genome (including six plasmids) with its 5,287 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2010-02-28 /pmc/articles/PMC3035258/ /pubmed/21304683 http://dx.doi.org/10.4056/sigs.681272 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Saunders, Elisabeth Tindall, Brian J. Fähnrich, Regine Lapidus, Alla Copeland, Alex Del Rio, Tijana Glavina Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Han, Cliff Detter, John C. Bruce, David Goodwin, Lynne Chain, Patrick Pitluck, Sam Pati, Amrita Ivanova, Natalia Mavromatis, Konstantinos Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Brettin, Thomas Rohde, Manfred Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Complete genome sequence of Haloterrigena turkmenica type strain (4k(T)) |
title | Complete genome sequence of Haloterrigena turkmenica type strain (4k(T)) |
title_full | Complete genome sequence of Haloterrigena turkmenica type strain (4k(T)) |
title_fullStr | Complete genome sequence of Haloterrigena turkmenica type strain (4k(T)) |
title_full_unstemmed | Complete genome sequence of Haloterrigena turkmenica type strain (4k(T)) |
title_short | Complete genome sequence of Haloterrigena turkmenica type strain (4k(T)) |
title_sort | complete genome sequence of haloterrigena turkmenica type strain (4k(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035258/ https://www.ncbi.nlm.nih.gov/pubmed/21304683 http://dx.doi.org/10.4056/sigs.681272 |
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