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Complete genome sequence of Haloterrigena turkmenica type strain (4k(T))

Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the...

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Autores principales: Saunders, Elisabeth, Tindall, Brian J., Fähnrich, Regine, Lapidus, Alla, Copeland, Alex, Del Rio, Tijana Glavina, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Detter, John C., Bruce, David, Goodwin, Lynne, Chain, Patrick, Pitluck, Sam, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Rohde, Manfred, Göker, Markus, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Klenk, Hans-Peter, Kyrpides, Nikos C.
Formato: Texto
Lenguaje:English
Publicado: Michigan State University 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035258/
https://www.ncbi.nlm.nih.gov/pubmed/21304683
http://dx.doi.org/10.4056/sigs.681272
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author Saunders, Elisabeth
Tindall, Brian J.
Fähnrich, Regine
Lapidus, Alla
Copeland, Alex
Del Rio, Tijana Glavina
Lucas, Susan
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Detter, John C.
Bruce, David
Goodwin, Lynne
Chain, Patrick
Pitluck, Sam
Pati, Amrita
Ivanova, Natalia
Mavromatis, Konstantinos
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Brettin, Thomas
Rohde, Manfred
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
author_facet Saunders, Elisabeth
Tindall, Brian J.
Fähnrich, Regine
Lapidus, Alla
Copeland, Alex
Del Rio, Tijana Glavina
Lucas, Susan
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Detter, John C.
Bruce, David
Goodwin, Lynne
Chain, Patrick
Pitluck, Sam
Pati, Amrita
Ivanova, Natalia
Mavromatis, Konstantinos
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Brettin, Thomas
Rohde, Manfred
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
author_sort Saunders, Elisabeth
collection PubMed
description Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the Halobacteriaceae, which created some taxonomic problems historically. H. turkmenica, was isolated from sulfate saline soil in Turkmenistan, is a relatively fast growing, chemoorganotrophic, carotenoid-containing, extreme halophile, requiring at least 2 M NaCl for growth. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Haloterrigena, but the eighth genome sequence from a member of the family Halobacteriaceae. The 5,440,782 bp genome (including six plasmids) with its 5,287 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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spelling pubmed-30352582011-02-08 Complete genome sequence of Haloterrigena turkmenica type strain (4k(T)) Saunders, Elisabeth Tindall, Brian J. Fähnrich, Regine Lapidus, Alla Copeland, Alex Del Rio, Tijana Glavina Lucas, Susan Chen, Feng Tice, Hope Cheng, Jan-Fang Han, Cliff Detter, John C. Bruce, David Goodwin, Lynne Chain, Patrick Pitluck, Sam Pati, Amrita Ivanova, Natalia Mavromatis, Konstantinos Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Brettin, Thomas Rohde, Manfred Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Stand Genomic Sci Short Genome Reports Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the Halobacteriaceae, which created some taxonomic problems historically. H. turkmenica, was isolated from sulfate saline soil in Turkmenistan, is a relatively fast growing, chemoorganotrophic, carotenoid-containing, extreme halophile, requiring at least 2 M NaCl for growth. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Haloterrigena, but the eighth genome sequence from a member of the family Halobacteriaceae. The 5,440,782 bp genome (including six plasmids) with its 5,287 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2010-02-28 /pmc/articles/PMC3035258/ /pubmed/21304683 http://dx.doi.org/10.4056/sigs.681272 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Saunders, Elisabeth
Tindall, Brian J.
Fähnrich, Regine
Lapidus, Alla
Copeland, Alex
Del Rio, Tijana Glavina
Lucas, Susan
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Detter, John C.
Bruce, David
Goodwin, Lynne
Chain, Patrick
Pitluck, Sam
Pati, Amrita
Ivanova, Natalia
Mavromatis, Konstantinos
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Brettin, Thomas
Rohde, Manfred
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
Complete genome sequence of Haloterrigena turkmenica type strain (4k(T))
title Complete genome sequence of Haloterrigena turkmenica type strain (4k(T))
title_full Complete genome sequence of Haloterrigena turkmenica type strain (4k(T))
title_fullStr Complete genome sequence of Haloterrigena turkmenica type strain (4k(T))
title_full_unstemmed Complete genome sequence of Haloterrigena turkmenica type strain (4k(T))
title_short Complete genome sequence of Haloterrigena turkmenica type strain (4k(T))
title_sort complete genome sequence of haloterrigena turkmenica type strain (4k(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035258/
https://www.ncbi.nlm.nih.gov/pubmed/21304683
http://dx.doi.org/10.4056/sigs.681272
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