Cargando…

Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T))

Dethiosulfovibrio peptidovorans Magot et al. 1997 is the type species of the genus Dethiosulfovibrio of the family Synergistaceae in the recently created phylum Synergistetes. The strictly anaerobic, vibriod, thiosulfate-reducing bacterium utilizes peptides and amino acids, but neither sugars nor fa...

Descripción completa

Detalles Bibliográficos
Autores principales: LaButti, Kurt, Mayilraj, Shanmugam, Clum, Alicia, Lucas, Susan, Glavina Del Rio, Tijana, Nolan, Matt, Tice, Hope, Cheng, Jan-Fang, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Spring, Stefan, Göker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, Lapidus, Alla
Formato: Texto
Lenguaje:English
Publicado: Michigan State University 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035263/
https://www.ncbi.nlm.nih.gov/pubmed/21304695
http://dx.doi.org/10.4056/sigs.1092865
_version_ 1782197749427470336
author LaButti, Kurt
Mayilraj, Shanmugam
Clum, Alicia
Lucas, Susan
Glavina Del Rio, Tijana
Nolan, Matt
Tice, Hope
Cheng, Jan-Fang
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Pati, Amrita
Goodwin, Lynne
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Rohde, Manfred
Spring, Stefan
Göker, Markus
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Lapidus, Alla
author_facet LaButti, Kurt
Mayilraj, Shanmugam
Clum, Alicia
Lucas, Susan
Glavina Del Rio, Tijana
Nolan, Matt
Tice, Hope
Cheng, Jan-Fang
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Pati, Amrita
Goodwin, Lynne
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Rohde, Manfred
Spring, Stefan
Göker, Markus
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Lapidus, Alla
author_sort LaButti, Kurt
collection PubMed
description Dethiosulfovibrio peptidovorans Magot et al. 1997 is the type species of the genus Dethiosulfovibrio of the family Synergistaceae in the recently created phylum Synergistetes. The strictly anaerobic, vibriod, thiosulfate-reducing bacterium utilizes peptides and amino acids, but neither sugars nor fatty acids. It was isolated from an offshore oil well where it was been reported to be involved in pitting corrosion of mild steel. Initially, this bacterium was described as a distant relative of the genus Thermoanaerobacter, but was not assigned to a genus, it was subsequently placed into the novel phylum Synergistetes. A large number of repeats in the genome sequence prevented an economically justifiable closure of the last gaps. This is only the third published genome from a member of the phylum Synergistetes. The 2,576,359 bp long genome consists of three contigs with 2,458 protein-coding and 59 RNA genes and is part of the Genomic Encyclopedia of Bacteria and Archaea project.
format Text
id pubmed-3035263
institution National Center for Biotechnology Information
language English
publishDate 2010
publisher Michigan State University
record_format MEDLINE/PubMed
spelling pubmed-30352632011-02-08 Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T)) LaButti, Kurt Mayilraj, Shanmugam Clum, Alicia Lucas, Susan Glavina Del Rio, Tijana Nolan, Matt Tice, Hope Cheng, Jan-Fang Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Pati, Amrita Goodwin, Lynne Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Rohde, Manfred Spring, Stefan Göker, Markus Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lapidus, Alla Stand Genomic Sci Short Genome Reports Dethiosulfovibrio peptidovorans Magot et al. 1997 is the type species of the genus Dethiosulfovibrio of the family Synergistaceae in the recently created phylum Synergistetes. The strictly anaerobic, vibriod, thiosulfate-reducing bacterium utilizes peptides and amino acids, but neither sugars nor fatty acids. It was isolated from an offshore oil well where it was been reported to be involved in pitting corrosion of mild steel. Initially, this bacterium was described as a distant relative of the genus Thermoanaerobacter, but was not assigned to a genus, it was subsequently placed into the novel phylum Synergistetes. A large number of repeats in the genome sequence prevented an economically justifiable closure of the last gaps. This is only the third published genome from a member of the phylum Synergistetes. The 2,576,359 bp long genome consists of three contigs with 2,458 protein-coding and 59 RNA genes and is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2010-08-20 /pmc/articles/PMC3035263/ /pubmed/21304695 http://dx.doi.org/10.4056/sigs.1092865 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
LaButti, Kurt
Mayilraj, Shanmugam
Clum, Alicia
Lucas, Susan
Glavina Del Rio, Tijana
Nolan, Matt
Tice, Hope
Cheng, Jan-Fang
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Pati, Amrita
Goodwin, Lynne
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Rohde, Manfred
Spring, Stefan
Göker, Markus
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Lapidus, Alla
Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T))
title Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T))
title_full Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T))
title_fullStr Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T))
title_full_unstemmed Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T))
title_short Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T))
title_sort permanent draft genome sequence of dethiosulfovibrio peptidovorans type strain (sebr 4207(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035263/
https://www.ncbi.nlm.nih.gov/pubmed/21304695
http://dx.doi.org/10.4056/sigs.1092865
work_keys_str_mv AT labuttikurt permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT mayilrajshanmugam permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT clumalicia permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT lucassusan permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT glavinadelriotijana permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT nolanmatt permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT ticehope permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT chengjanfang permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT pitlucksam permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT liolioskonstantinos permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT ivanovanatalia permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT mavromatiskonstantinos permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT mikhailovanatalia permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT patiamrita permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT goodwinlynne permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT chenamy permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT palaniappankrishna permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT landmiriam permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT hauserloren permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT changyunjuan permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT jeffriescynthiad permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT rohdemanfred permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT springstefan permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT gokermarkus permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT woyketanja permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT bristowjames permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT eisenjonathana permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT markowitzvictor permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT hugenholtzphilip permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT kyrpidesnikosc permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT klenkhanspeter permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t
AT lapidusalla permanentdraftgenomesequenceofdethiosulfovibriopeptidovoranstypestrainsebr4207t