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Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T))
Dethiosulfovibrio peptidovorans Magot et al. 1997 is the type species of the genus Dethiosulfovibrio of the family Synergistaceae in the recently created phylum Synergistetes. The strictly anaerobic, vibriod, thiosulfate-reducing bacterium utilizes peptides and amino acids, but neither sugars nor fa...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035263/ https://www.ncbi.nlm.nih.gov/pubmed/21304695 http://dx.doi.org/10.4056/sigs.1092865 |
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author | LaButti, Kurt Mayilraj, Shanmugam Clum, Alicia Lucas, Susan Glavina Del Rio, Tijana Nolan, Matt Tice, Hope Cheng, Jan-Fang Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Pati, Amrita Goodwin, Lynne Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Rohde, Manfred Spring, Stefan Göker, Markus Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lapidus, Alla |
author_facet | LaButti, Kurt Mayilraj, Shanmugam Clum, Alicia Lucas, Susan Glavina Del Rio, Tijana Nolan, Matt Tice, Hope Cheng, Jan-Fang Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Pati, Amrita Goodwin, Lynne Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Rohde, Manfred Spring, Stefan Göker, Markus Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lapidus, Alla |
author_sort | LaButti, Kurt |
collection | PubMed |
description | Dethiosulfovibrio peptidovorans Magot et al. 1997 is the type species of the genus Dethiosulfovibrio of the family Synergistaceae in the recently created phylum Synergistetes. The strictly anaerobic, vibriod, thiosulfate-reducing bacterium utilizes peptides and amino acids, but neither sugars nor fatty acids. It was isolated from an offshore oil well where it was been reported to be involved in pitting corrosion of mild steel. Initially, this bacterium was described as a distant relative of the genus Thermoanaerobacter, but was not assigned to a genus, it was subsequently placed into the novel phylum Synergistetes. A large number of repeats in the genome sequence prevented an economically justifiable closure of the last gaps. This is only the third published genome from a member of the phylum Synergistetes. The 2,576,359 bp long genome consists of three contigs with 2,458 protein-coding and 59 RNA genes and is part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Text |
id | pubmed-3035263 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-30352632011-02-08 Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T)) LaButti, Kurt Mayilraj, Shanmugam Clum, Alicia Lucas, Susan Glavina Del Rio, Tijana Nolan, Matt Tice, Hope Cheng, Jan-Fang Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Pati, Amrita Goodwin, Lynne Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Rohde, Manfred Spring, Stefan Göker, Markus Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lapidus, Alla Stand Genomic Sci Short Genome Reports Dethiosulfovibrio peptidovorans Magot et al. 1997 is the type species of the genus Dethiosulfovibrio of the family Synergistaceae in the recently created phylum Synergistetes. The strictly anaerobic, vibriod, thiosulfate-reducing bacterium utilizes peptides and amino acids, but neither sugars nor fatty acids. It was isolated from an offshore oil well where it was been reported to be involved in pitting corrosion of mild steel. Initially, this bacterium was described as a distant relative of the genus Thermoanaerobacter, but was not assigned to a genus, it was subsequently placed into the novel phylum Synergistetes. A large number of repeats in the genome sequence prevented an economically justifiable closure of the last gaps. This is only the third published genome from a member of the phylum Synergistetes. The 2,576,359 bp long genome consists of three contigs with 2,458 protein-coding and 59 RNA genes and is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2010-08-20 /pmc/articles/PMC3035263/ /pubmed/21304695 http://dx.doi.org/10.4056/sigs.1092865 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports LaButti, Kurt Mayilraj, Shanmugam Clum, Alicia Lucas, Susan Glavina Del Rio, Tijana Nolan, Matt Tice, Hope Cheng, Jan-Fang Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Pati, Amrita Goodwin, Lynne Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Rohde, Manfred Spring, Stefan Göker, Markus Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lapidus, Alla Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T)) |
title | Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T)) |
title_full | Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T)) |
title_fullStr | Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T)) |
title_full_unstemmed | Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T)) |
title_short | Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207(T)) |
title_sort | permanent draft genome sequence of dethiosulfovibrio peptidovorans type strain (sebr 4207(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035263/ https://www.ncbi.nlm.nih.gov/pubmed/21304695 http://dx.doi.org/10.4056/sigs.1092865 |
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