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Complete genome sequence of Arcobacter nitrofigilis type strain (CI(T))

Arcobacter nitrofigilis (McClung et al. 1983) Vandamme et al. 1991 is the type species of the genus Arcobacter in the family Campylobacteraceae within the Epsilonproteobacteria. The species was first described in 1983 as Campylobacter nitrofigilis [1] after its detection as a free-living, nitrogen-f...

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Autores principales: Pati, Amrita, Gronow, Sabine, Lapidus, Alla, Copeland, Alex, Glavina Del Rio, Tijana, Nolan, Matt, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Chertkov, Olga, Bruce, David, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Rohde, Manfred, Göker, Markus, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Klenk, Hans-Peter, Kyrpides, Nikos C.
Formato: Texto
Lenguaje:English
Publicado: Michigan State University 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035288/
https://www.ncbi.nlm.nih.gov/pubmed/21304714
http://dx.doi.org/10.4056/sigs.912121
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author Pati, Amrita
Gronow, Sabine
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Nolan, Matt
Lucas, Susan
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Chertkov, Olga
Bruce, David
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Detter, John C.
Rohde, Manfred
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
author_facet Pati, Amrita
Gronow, Sabine
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Nolan, Matt
Lucas, Susan
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Chertkov, Olga
Bruce, David
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Detter, John C.
Rohde, Manfred
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
author_sort Pati, Amrita
collection PubMed
description Arcobacter nitrofigilis (McClung et al. 1983) Vandamme et al. 1991 is the type species of the genus Arcobacter in the family Campylobacteraceae within the Epsilonproteobacteria. The species was first described in 1983 as Campylobacter nitrofigilis [1] after its detection as a free-living, nitrogen-fixing Campylobacter species associated with Spartina alterniflora Loisel roots [2]. It is of phylogenetic interest because of its lifestyle as a symbiotic organism in a marine environment in contrast to many other Arcobacter species which are associated with warm-blooded animals and tend to be pathogenic. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a type stain of the genus Arcobacter. The 3,192,235 bp genome with its 3,154 protein-coding and 70 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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spelling pubmed-30352882011-02-08 Complete genome sequence of Arcobacter nitrofigilis type strain (CI(T)) Pati, Amrita Gronow, Sabine Lapidus, Alla Copeland, Alex Glavina Del Rio, Tijana Nolan, Matt Lucas, Susan Tice, Hope Cheng, Jan-Fang Han, Cliff Chertkov, Olga Bruce, David Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Detter, John C. Rohde, Manfred Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Stand Genomic Sci Short Genome Reports Arcobacter nitrofigilis (McClung et al. 1983) Vandamme et al. 1991 is the type species of the genus Arcobacter in the family Campylobacteraceae within the Epsilonproteobacteria. The species was first described in 1983 as Campylobacter nitrofigilis [1] after its detection as a free-living, nitrogen-fixing Campylobacter species associated with Spartina alterniflora Loisel roots [2]. It is of phylogenetic interest because of its lifestyle as a symbiotic organism in a marine environment in contrast to many other Arcobacter species which are associated with warm-blooded animals and tend to be pathogenic. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a type stain of the genus Arcobacter. The 3,192,235 bp genome with its 3,154 protein-coding and 70 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2010-06-15 /pmc/articles/PMC3035288/ /pubmed/21304714 http://dx.doi.org/10.4056/sigs.912121 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Pati, Amrita
Gronow, Sabine
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Nolan, Matt
Lucas, Susan
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Chertkov, Olga
Bruce, David
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Detter, John C.
Rohde, Manfred
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
Complete genome sequence of Arcobacter nitrofigilis type strain (CI(T))
title Complete genome sequence of Arcobacter nitrofigilis type strain (CI(T))
title_full Complete genome sequence of Arcobacter nitrofigilis type strain (CI(T))
title_fullStr Complete genome sequence of Arcobacter nitrofigilis type strain (CI(T))
title_full_unstemmed Complete genome sequence of Arcobacter nitrofigilis type strain (CI(T))
title_short Complete genome sequence of Arcobacter nitrofigilis type strain (CI(T))
title_sort complete genome sequence of arcobacter nitrofigilis type strain (ci(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035288/
https://www.ncbi.nlm.nih.gov/pubmed/21304714
http://dx.doi.org/10.4056/sigs.912121
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