Cargando…

Complete genome sequence of Aminobacterium colombiense type strain (ALA-1(T))

Aminobacterium colombiense Baena et al. 1999 is the type species of the genus Aminobacterium. This genus is of large interest because of its isolated phylogenetic location in the family Synergistaceae, its strictly anaerobic lifestyle, and its ability to grow by fermentation of a limited range of am...

Descripción completa

Detalles Bibliográficos
Autores principales: Chertkov, Olga, Sikorski, Johannes, Brambilla, Evelyne, Lapidus, Alla, Copeland, Alex, Glavina Del Rio, Tijana, Nolan, Matt, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Detter, John C., Bruce, David, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Spring, Stefan, Rohde, Manfred, Göker, Markus, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter
Formato: Texto
Lenguaje:English
Publicado: Michigan State University 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035294/
https://www.ncbi.nlm.nih.gov/pubmed/21304712
http://dx.doi.org/10.4056/sigs.902116
_version_ 1782197756817833984
author Chertkov, Olga
Sikorski, Johannes
Brambilla, Evelyne
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Nolan, Matt
Lucas, Susan
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Detter, John C.
Bruce, David
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Ovchinnikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Spring, Stefan
Rohde, Manfred
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
author_facet Chertkov, Olga
Sikorski, Johannes
Brambilla, Evelyne
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Nolan, Matt
Lucas, Susan
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Detter, John C.
Bruce, David
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Ovchinnikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Spring, Stefan
Rohde, Manfred
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
author_sort Chertkov, Olga
collection PubMed
description Aminobacterium colombiense Baena et al. 1999 is the type species of the genus Aminobacterium. This genus is of large interest because of its isolated phylogenetic location in the family Synergistaceae, its strictly anaerobic lifestyle, and its ability to grow by fermentation of a limited range of amino acids but not carbohydrates. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member of the family Synergistaceae and the first genome sequence of a member of the genus Aminobacterium. The 1,980,592 bp long genome with its 1,914 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
format Text
id pubmed-3035294
institution National Center for Biotechnology Information
language English
publishDate 2010
publisher Michigan State University
record_format MEDLINE/PubMed
spelling pubmed-30352942011-02-08 Complete genome sequence of Aminobacterium colombiense type strain (ALA-1(T)) Chertkov, Olga Sikorski, Johannes Brambilla, Evelyne Lapidus, Alla Copeland, Alex Glavina Del Rio, Tijana Nolan, Matt Lucas, Susan Tice, Hope Cheng, Jan-Fang Han, Cliff Detter, John C. Bruce, David Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Ovchinnikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Spring, Stefan Rohde, Manfred Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Stand Genomic Sci Short Genome Reports Aminobacterium colombiense Baena et al. 1999 is the type species of the genus Aminobacterium. This genus is of large interest because of its isolated phylogenetic location in the family Synergistaceae, its strictly anaerobic lifestyle, and its ability to grow by fermentation of a limited range of amino acids but not carbohydrates. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member of the family Synergistaceae and the first genome sequence of a member of the genus Aminobacterium. The 1,980,592 bp long genome with its 1,914 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2010-06-15 /pmc/articles/PMC3035294/ /pubmed/21304712 http://dx.doi.org/10.4056/sigs.902116 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Chertkov, Olga
Sikorski, Johannes
Brambilla, Evelyne
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Nolan, Matt
Lucas, Susan
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Detter, John C.
Bruce, David
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Ovchinnikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Spring, Stefan
Rohde, Manfred
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Complete genome sequence of Aminobacterium colombiense type strain (ALA-1(T))
title Complete genome sequence of Aminobacterium colombiense type strain (ALA-1(T))
title_full Complete genome sequence of Aminobacterium colombiense type strain (ALA-1(T))
title_fullStr Complete genome sequence of Aminobacterium colombiense type strain (ALA-1(T))
title_full_unstemmed Complete genome sequence of Aminobacterium colombiense type strain (ALA-1(T))
title_short Complete genome sequence of Aminobacterium colombiense type strain (ALA-1(T))
title_sort complete genome sequence of aminobacterium colombiense type strain (ala-1(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035294/
https://www.ncbi.nlm.nih.gov/pubmed/21304712
http://dx.doi.org/10.4056/sigs.902116
work_keys_str_mv AT chertkovolga completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT sikorskijohannes completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT brambillaevelyne completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT lapidusalla completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT copelandalex completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT glavinadelriotijana completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT nolanmatt completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT lucassusan completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT ticehope completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT chengjanfang completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT hancliff completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT detterjohnc completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT brucedavid completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT tapiaroxanne completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT goodwinlynne completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT pitlucksam completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT liolioskonstantinos completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT ivanovanatalia completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT mavromatiskonstantinos completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT ovchinnikovagalina completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT patiamrita completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT chenamy completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT palaniappankrishna completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT landmiriam completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT hauserloren completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT changyunjuan completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT jeffriescynthiad completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT springstefan completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT rohdemanfred completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT gokermarkus completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT bristowjames completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT eisenjonathana completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT markowitzvictor completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT hugenholtzphilip completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT kyrpidesnikosc completegenomesequenceofaminobacteriumcolombiensetypestrainala1t
AT klenkhanspeter completegenomesequenceofaminobacteriumcolombiensetypestrainala1t